Mapping multivalued onto Boolean dynamics

DOI10.1016/j.jtbi.2010.09.017zbMath1331.92051WikidataQ51655709 ScholiaQ51655709MaRDI QIDQ5963470

Claudine Chaouiya, Elisabeth Remy, Gilles Didier

Publication date: 22 February 2016

Published in: Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.jtbi.2010.09.017

zbMATH Keywords

gene regulatory networks; Boolean modelling; cell dynamics; multivalued modelling

Mathematics Subject Classification ID

92C40: Biochemistry, molecular biology

92C42: Systems biology, networks

Related Items

Controllability of Boolean networks via input controls under Harvey's update scheme, Phenotype control techniques for Boolean gene regulatory networks, From multivalued to Boolean functions: preservation of soft nested canalization, Analysis and characterization of asynchronous state transition graphs using extremal states, A circuit-preserving mapping from multilevel to Boolean dynamics, On the conversion of multivalued to Boolean dynamics, Reduction of Boolean network models, Modeling multi-valued biological interaction networks using fuzzy answer set programming, Minimal trap spaces of logical models are maximal siphons of their Petri net encoding, Bilevel integer programming on a Boolean network for discovering critical genetic alterations in cancer development and therapy, Stable states of Boolean regulatory networks composed over hexagonal grids, Static analysis and stochastic search for reachability problem, Control of intracellular molecular networks using algebraic methods, Bi-decomposition of multi-valued logical functions and its applications, Disturbance decoupling of mix-valued logical networks via the semi-tensor product method, Boolean models of the transport, synthesis, and metabolism of tryptophan in \textit{Escherichia coli}

Uses Software

• Ginsim

Cites Work

• Unnamed Item
• Deriving behavior of Boolean bioregulatory networks from subnetwork dynamics
• Logical identification of all steady states: The concept of feedback loop characteristic states
• From structure to dynamics: frequency tuning in the p53-Mdm2 network. I: Logical approach
• Uncovering operational interactions in genetic networks using asynchronous Boolean dynamics
• Segmenting the fly embryo: a logical analysis of the \textit{pair-rule} cross-regulatory module
• Robustness and fragility of Boolean models for genetic regulatory networks
• Robustness and state-space structure of Boolean gene regulatory models
• Necessary conditions for multistationarity in discrete dynamical systems
• Theory and Applications of Satisfiability Testing