Signed rearrangement distances considering repeated genes, intergenic regions, and indels

DOI10.1007/s10878-023-01083-wOpenAlexW4386588311MaRDI QIDQ6053967

Gabriel Siqueira, Zanoni Dias, Alexsandro Oliveira Alexandrino

Publication date: 27 September 2023

Published in: Journal of Combinatorial Optimization (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1007/s10878-023-01083-w

zbMATH Keywords

transpositiongenome rearrangementreversalintergenic regions

Mathematics Subject Classification ID

Protein sequences, DNA sequences (92D20) Genetics and epigenetics (92D10)

Cites Work

• Reversal distance on genomes with different gene content and intergenic regions information
• The string edit distance matching problem with moves
• Comparative Genomics on Artificial Life
• Reversals and Transpositions Over Finite Alphabets
• Reversal Distance for Strings with Duplicates: Linear Time Approximation Using Hitting Set
• Algorithms and Computation

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