Gene order phylogeny via ancestral genome reconstruction under Dollo

DOI10.1007/978-3-031-36911-7_7MaRDI QIDQ6086500zbMATH OpenFDO

Authors Qiaoji Xu, David Sankoff

Publication date 12 December 2023

Published in Comparative Genomics (Search for Journal in Brave)

Copyright license Creative Commons Attribution 4.0 International

Full work available at URL https://doi.org/10.1007/978-3-031-36911-7_7

zbMATH Keywords

Dollo's lawgene proximitiesinferring gene-order HTUslarge phylogeny problemmaximum weight matchingplant orders

Mathematics Subject Classification ID

Genetics and epigenetics (92D10) Problems related to evolution (92D15)

Recommendations

• Reconstructing phylogenies from gene-content and gene-order data
• Steps toward accurate reconstructions of phylogenies from gene-order data.
• Duplication, rearrangement, and reconciliation
• Reconstructing an ancestral genome using minimum segments duplications and reversals.
• An empirical comparison of phylogenetic methods on chloroplast gene order data in Campanula\-ceae

Cites work

• Efficient algorithms for finding maximum matching in graphs
• Paths, Trees, and Flowers

Cited in

(1)

• `Genome order index' should not be used for defining compositional contraints in nucleotide sequences

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