LRBinner: Binning Long Reads in Metagenomics Datasets

DOI10.4230/LIPICS.WABI.2021.11MaRDI QIDQ6133878zbMATH OpenOpenAlexFDO

Authors

Publication date 24 July 2023

Full work available at URL https://drops.dagstuhl.de/opus/volltexte/2021/14364/pdf/LIPIcs-WABI-2021-11.pdf/

zbMATH Keywords

clusteringmachine learninglong readsmetagenomics binning

Mathematics Subject Classification ID

Learning and adaptive systems in artificial intelligence (68T05) Protein sequences, DNA sequences (92D20) Computational methods for problems pertaining to biology (92-08)

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Cited in

(6)

• Long Reads Enable Accurate Estimates of Complexity of Metagenomes
• Graphbin2: refined and overlapped binning of metagenomic contigs using assembly graphs
• Metagenomic reads binning with spaced seeds
• Metagenomics binning of long reads using read-overlap graphs
• CLMB: deep contrastive learning for robust metagenomic binning
• MetaCoAG: binning metagenomic contigs via composition, coverage and assembly graphs

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