Application of discontinuous Galerkin methods for reaction-diffusion systems in developmental biology

DOI10.1007/S10915-008-9218-4zbMATH Open1203.65194OpenAlexW2023954922MaRDI QIDQ618488FDOQ618488

Yong-Tao Zhang, Mark Alber, Stuart A. Newman, Jianfeng Zhu

Publication date: 16 January 2011

Published in: Journal of Scientific Computing (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1007/s10915-008-9218-4

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zbMATH Keywords

operator splittingreaction-diffusion equationsdiscontinuous Galerkin finite element methodsdevelopmental biologycomplex geometrytriangular meshes

Mathematics Subject Classification ID

Reaction-diffusion equations (35K57) Numerical methods for stiff equations (65L04) Finite element, Rayleigh-Ritz and Galerkin methods for initial value and initial-boundary value problems involving PDEs (65M60) General biology and biomathematics (92B05)

Cites Work

• Nonlinear aspects of chemotaxis
• Pattern formation in a generalized chemotactic model
• Mathematical biology. Vol. 2: Spatial models and biomedical applications.
• Pattern formation in reaction-diffusion models with nonuniform domain growth
• TVB Runge-Kutta Local Projection Discontinuous Galerkin Finite Element Method for Conservation Laws II: General Framework
• An Interior Penalty Finite Element Method with Discontinuous Elements
• The Local Discontinuous Galerkin Method for Time-Dependent Convection-Diffusion Systems
• High-Order WENO Schemes for Hamilton--Jacobi Equations on Triangular Meshes
• The chemical basis of morphogenesis
• On a Nonlinear Diffusion Equation Describing Population Growth
• A study of moving mesh PDE methods for numerical simulation of blowup in reaction diffusion equations
• A discontinuous \(hp\) finite element method for convection-diffusion problems
• A moving grid finite element method applied to a model biological pattern generator
• A moving grid finite element method for the simulation of pattern generation by Turing models on growing domains
• Title not available (Why is that?)
• Title not available (Why is that?)
• A Priori Error Estimates for Finite Element Methods Based on Discontinuous Approximation Spaces for Elliptic Problems
• Model for chemotaxis
• An analysis of operator splitting techniques in the stiff case
• Runge--Kutta discontinuous Galerkin methods for convection-dominated problems
• Local discontinuous Galerkin methods for nonlinear Schrödinger equations
• Implicit-explicit methods for reaction-diffusion problems in pattern formation
• The Direct Discontinuous Galerkin (DDG) Methods for Diffusion Problems
• A discontinuous Galerkin finite element method for time dependent partial differential equations with higher order derivatives
• RKC time-stepping for advection-diffusion-reaction problems
• TVB Runge-Kutta local projection discontinuous Galerkin finite element method for conservation laws. III: One-dimensional systems
• The Runge-Kutta discontinuous Galerkin method for conservation laws. I: Multidimensional systems
• Parallel, adaptive finite element methods for conservation laws
• Time-stepping schemes for moving grid finite elements applied to reaction-diffusion systems on fixed and growing domains
• Numerical exploration of a system of reaction-diffusion equations with internal and transient layers
• A high-order accurate discontinuous finite element method for the numerical solution of the compressible Navier-Stokes equations
• A discontinuous Galerkin method for higher-order ordinary differential equations
• The Runge-Kutta local projection $P^1$-discontinuous-Galerkin finite element method for scalar conservation laws
• The Runge-Kutta Local Projection Discontinuous Galerkin Finite Element Method for Conservation Laws. IV: The Multidimensional Case
• A discontinuous \(hp\) finite element method for diffusion problems
• Title not available (Why is that?)
• Title not available (Why is that?)
• A comparison of implicit time integration methods for nonlinear relaxation and diffusion
• Local discontinuous Galerkin methods for nonlinear dispersive equations
• Title not available (Why is that?)
• On the Construction and Comparison of Difference Schemes
• Title not available (Why is that?)
• A contribution to the construction of diffusion fluxes for finite volume and discontinuous Galerkin schemes
• Travelling waves in a wound healing assay.
• Local discontinuous Galerkin methods for partial differential equations with higher order derivatives
• Local discontinuous Galerkin methods for two classes of two-dimensional nonlinear wave equa\-tions
• A Local Discontinuous Galerkin Method for KdV Type Equations
• A two-dimensional numerical study of spatial pattern formation in interacting Turing systems
• Studies of the accuracy of time integration methods for reaction-diffusion equations.
• Local discontinuous Galerkin methods for the Kuramoto-Sivashinsky equations and the Ito-type coupled KdV equations
• A memory-efficient finite element method for systems of reaction--diffusion equations with non-smooth forcing
• Explicit Time-Stepping for Stiff ODEs
• Feedback-mediated control of spiral waves
• Stiff differential equations solved by Radau methods
• Title not available (Why is that?)
• A posteriori error estimation for a new stabilized discontinuous Galerkin method
• Existence of solutions to a new model of biological pattern formation
• Size-dependent symmetry breaking in models for morphogenesis
• Adaptive moving mesh computations for reaction--diffusion systems
• High order A-stable numerical methods for stiff problems
• The morphostatic limit for a model of skeletal pattern formation in the vertebrate limb
• Numerical Challenges for Resolving Spike Dynamics for Two One-Dimensional Reaction-Diffusion Systems
• Trapezoidal and midpoint splittings for initial-boundary value problems

Cited In (42)

• Superconvergent interpolatory HDG methods for reaction diffusion equations. I: An \(HDG_k\) method
• Preconditioning the Mass Matrix for High Order Finite Element Approximation on Tetrahedra
• Classical regularity and wave structures of fractional order Selkov-Schnakenberg system
• Approximate analytical solutions of Schnakenberg systems by homotopy analysis method
• Numerical investigation based on a local meshless radial point interpolation for solving coupled nonlinear reaction-diffusion system
• Krylov implicit integration factor WENO methods for semilinear and fully nonlinear advection-diffusion-reaction equations
• The local integral equation method for pattern formation simulations in reaction-diffusion systems
• CMMSE: Analysis of order reduction when Lawson methods integrate nonlinear initial boundary value problems
• Mathematical modeling of vertebrate limb development
• A Chebyshev multidomain adaptive mesh method for reaction-diffusion equations
• Stability analysis for Schnakenberg reaction-diffusion model with gene expression time delay
• Krylov implicit integration factor methods for spatial discretization on high-dimensional unstructured meshes: application to discontinuous Galerkin methods
• A new nonlinear Galerkin finite element method for the computation of reaction diffusion equations
• The finite volume spectral element method to solve Turing models in the biological pattern formation
• Approximate solutions for some reaction-diffusion systems with non integer order
• Krylov implicit integration factor discontinuous Galerkin methods on sparse grids for high dimensional reaction-diffusion equations
• Two-grid method for nonlinear reaction-diffusion equations by mixed finite element methods
• A Meshfree Technique for Numerical Simulation of Reaction-Diffusion Systems in Developmental Biology
• Interpolatory super-convergent discontinuous Galerkin methods for nonlinear reaction diffusion equations on three dimensional domains
• An interpolatory directional splitting-local discontinuous Galerkin method with application to pattern formation in 2D/3D
• Title not available (Why is that?)
• Discontinuous Galerkin \(h p\)-adaptive methods for multiscale chemical reactors: quiescent reactors
• Spatiotemporal pattern formations in stiff reaction-diffusion systems by new time marching methods
• Direct discontinuous Galerkin method for nonlinear reaction-diffusion systems in pattern formation
• Wavelets computational modeling of nonlinear coupled reaction–diffusion models arising in chemical processes
• A first-order computational algorithm for reaction-diffusion type equations via primal-dual hybrid gradient method
• Discretization, bifurcation analysis and chaos control for Schnakenberg model
• Reprint of ``Domain decomposition multigrid methods for nonlinear reaction-diffusion problems
• New two-derivative implicit-explicit Runge-Kutta methods for stiff reaction-diffusion systems
• High-fidelity simulations for Turing pattern formation in multi-dimensional Gray-Scott reaction-diffusion system
• Krylov single-step implicit integration factor WENO methods for advection-diffusion-reaction equations
• Finite volume element approximation of an inhomogeneous Brusselator model with cross-diffusion
• Foreword: Discontinuous Galerkin methods for partial differential equations
• Numerical algorithm for a generalized form of Schnakenberg reaction-diffusion model with gene expression time delay
• Fast numerical algorithm for the reaction-diffusion equations using an interpolating method
• Mathematical modeling of chondrogenic pattern formation during limb development: recent advances in continuous models
• Title not available (Why is that?)
• Local Discontinuous Galerkin Methods for Reaction-Diffusion Systems on Unstructured Triangular Meshes
• LDG methods for reaction-diffusion systems with application of Krylov implicit integration factor methods
• Approximation of continuous surface differential operators with the generalized moving least-squares (GMLS) method for solving reaction-diffusion equation
• Continuously bounds-preserving discontinuous Galerkin methods for hyperbolic conservation laws
• Domain decomposition multigrid methods for nonlinear reaction-diffusion problems

Uses Software

• RKC
• RADAU

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