Harissa: stochastic simulation and inference of gene regulatory networks based on transcriptional bursting
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Cites work
- Averaging and large deviation principles for fully-coupled piecewise deterministic Markov processes and applications to molecular motors
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- Reduction of a stochastic model of gene expression: Lagrangian dynamics gives access to basins of attraction as cell types and metastabilty
- Some simple but challenging Markov processes
- Stochastic gene expression with a multistate promoter: breaking down exact distributions
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