Bethe Ansatz in the Bernoulli Matching Model of Random Sequence Alignment
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Publication:6207026
DOI10.1103/PHYSREVE.77.011110arXiv0710.1030WikidataQ80901268 ScholiaQ80901268MaRDI QIDQ6207026FDOQ6207026
Authors: Satya N. Majumdar, Kirone Mallick, S. Nechaev 
Publication date: 4 October 2007
Abstract: For the Bernoulli Matching model of sequence alignment problem we apply the Bethe ansatz technique via an exact mapping to the 5--vertex model on a square lattice. Considering the terrace--like representation of the sequence alignment problem, we reproduce by the Bethe ansatz the results for the averaged length of the Longest Common Subsequence in Bernoulli approximation. In addition, we compute the average number of nucleation centers of the terraces.
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