Dynamics of actively regulated gene networks
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Publication:633753
DOI10.1016/J.PHYSD.2010.12.010zbMATH Open1218.92040OpenAlexW2167751642MaRDI QIDQ633753FDOQ633753
Authors: Liliana Ironi, Luigi Panzeri, Erik Plahte, Valeria Simoncini 
Publication date: 29 March 2011
Published in: Physica D (Search for Journal in Brave)
Full work available at URL: https://doi.org/10.1016/j.physd.2010.12.010
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Genetics and epigenetics (92D10) Dynamical systems in biology (37N25) Systems biology, networks (92C42)
Cites Work
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Cited In (43)
- Sensitive dependence on initial conditions in gene networks
- Singular dynamics in gene network models
- Introduction to focus issue: quantitative approaches to genetic networks
- On the dynamics of a gene regulatory network
- Nonuniqueness phenomena in discontinuous dynamical systems and their regularizations
- Bifurcation analysis of a mathematical model for genetic regulatory network with time delays
- Periodic solutions of gene networks with steep sigmoidal regulatory functions
- Proteomic waves in networks of transcriptional regulators
- A yeast cell cycle pulse generator model shows consistency with multiple oscillatory and checkpoint mutant datasets
- Process-oriented geometric singular perturbation theory and calcium dynamics
- Lattice structures that parameterize regulatory network dynamics
- Hybrid models of genetic networks: mathematical challenges and biological relevance
- Piecewise linear and Boolean models of chemical reaction networks
- Convergence properties of posttranslationally modified protein-protein switching networks with fast decay rates
- Nonlinear and temporal multiscale dynamics of gene regulatory networks: a qualitative simulator
- Modeling transport regulation in gene regulatory networks
- Extending combinatorial regulatory network modeling to include activity control and decay modulation
- Oscillator death in coupled biochemical oscillators
- Dynamics analysis of gene regulatory networks
- Numerical simulation of piecewise-linear models of gene regulatory networks using complementarity systems
- A modelling framework for gene regulatory networks including transcription and translation
- Exploring the behavior of small eukaryotic gene networks
- Bifurcation analysis of gene regulatory circuits subject to copy number variation
- Assigning probabilities to qualitative dynamics of gene regulatory networks
- Influence of the number of thresholds on the dynamics of models with switchings of the biological systems
- Stability and bifurcations of equilibria in networks with piecewise linear interactions
- Equilibria and their stability in networks with steep sigmoidal nonlinearities
- Analysis and generic properties of gene regulatory networks with graded response functions
- Solutions leaving a codimension-\(2\) sliding
- Cyclic negative feedback systems: what is the chance of oscillation?
- Classification of hidden dynamics in discontinuous dynamical systems
- Two classes of ODE models with switch-like behavior
- Zeno breaking, the contact effect and sensitive behaviour in piecewise-linear systems
- Understanding broad-spike oscillations in a model of intracellular calcium dynamics
- When activators repress and repressors activate: a qualitative analysis of the Shea-Ackers model
- Ramp approximations of sigmoid control functions in gene networks
- Synchrony patterns in gene regulatory networks
- On the impact of the distance between two genes on their interaction curve
- Dynamics of a simple regulatory switch
- Global dynamics for switching systems and their extensions by linear differential equations
- Dynamics of transcription-translation networks
- Combinatorial representation of parameter space for switching networks
- Comparison of combinatorial signatures of global network dynamics generated by two classes of ODE models
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