Dynamics of actively regulated gene networks
From MaRDI portal
Publication:633753
DOI10.1016/j.physd.2010.12.010zbMath1218.92040OpenAlexW2167751642MaRDI QIDQ633753
Erik Plahte, Liliana Ironi, Luigi Panzeri, Valeria Simoncini
Publication date: 29 March 2011
Published in: Physica D (Search for Journal in Brave)
Full work available at URL: https://doi.org/10.1016/j.physd.2010.12.010
Dynamical systems in biology (37N25) Genetics and epigenetics (92D10) Systems biology, networks (92C42)
Related Items
Convergence properties of posttranslationally modified protein-protein switching networks with fast decay rates ⋮ Bifurcation analysis of a mathematical model for genetic regulatory network with time delays ⋮ Modeling transport regulation in gene regulatory networks ⋮ Classification of Hidden Dynamics in Discontinuous Dynamical Systems ⋮ Process-Oriented Geometric Singular Perturbation Theory and Calcium Dynamics ⋮ Solutions leaving a codimension-\(2\) sliding ⋮ A modelling framework for gene regulatory networks including transcription and translation ⋮ Oscillator death in coupled biochemical oscillators ⋮ A yeast cell cycle pulse generator model shows consistency with multiple oscillatory and checkpoint mutant datasets ⋮ Global dynamics for switching systems and their extensions by linear differential equations ⋮ Hybrid models of genetic networks: mathematical challenges and biological relevance ⋮ Cyclic negative feedback systems: what is the chance of oscillation? ⋮ Comparison of Combinatorial Signatures of Global Network Dynamics Generated by Two Classes of ODE Models ⋮ Two classes of ODE models with switch-like behavior ⋮ Numerical simulation of piecewise-linear models of gene regulatory networks using complementarity systems ⋮ Assigning probabilities to qualitative dynamics of gene regulatory networks ⋮ Nonlinear and temporal multiscale dynamics of gene regulatory networks: a qualitative simulator ⋮ Piecewise linear and Boolean models of chemical reaction networks ⋮ Introduction to Focus Issue: Quantitative Approaches to Genetic Networks ⋮ Sensitive dependence on initial conditions in gene networks ⋮ Stability and Bifurcations of Equilibria in Networks with Piecewise Linear Interactions ⋮ Zeno breaking, the Contact effect and sensitive behaviour in piecewise-linear systems ⋮ Periodic solutions of gene networks with steep sigmoidal regulatory functions ⋮ Ramp approximations of sigmoid control functions in gene networks ⋮ Combinatorial Representation of Parameter Space for Switching Networks ⋮ Equilibria and their Stability in Networks with Steep Sigmoidal Nonlinearities ⋮ Extending Combinatorial Regulatory Network Modeling to Include Activity Control and Decay Modulation
Uses Software
Cites Work
- Unnamed Item
- Unnamed Item
- Unnamed Item
- Unnamed Item
- Unnamed Item
- Qualitative simulation of genetic regulatory networks using piecewise-linear models
- A methodological basis for description and analysis of systems with complex switch-like interactions
- Comparing different ODE modelling approaches for gene regulatory networks
- Analysis and generic properties of gene regulatory networks with graded response functions
- Reconstruction of transcription-translation dynamics with a model of gene networks
- An Algorithm for Qualitative Simulation of Gene Regulatory Networks with Steep Sigmoidal Response Functions
- Global analysis of steady points for systems of differential equations with sigmoid interactions
- Analysis of continuous-time switching networks
