Reconstructing free energy profiles from nonequilibrium relaxation trajectories

DOI10.1007/s10955-011-0242-7zbMath1226.82055OpenAlexW2089183083MaRDI QIDQ639324

Qi Zhang, Jasna Brujić, Eric Vanden-Eijnden

Publication date: 20 September 2011

Published in: Journal of Statistical Physics (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1007/s10955-011-0242-7

zbMATH Keywords

maximum likelihoodBayesian samplingfree energy calculationnonequilibrium sampling

Mathematics Subject Classification ID

Bayesian inference (62F15) Statistical mechanics of polymers (82D60) Biophysics (92C05) Stochastic methods (Fokker-Planck, Langevin, etc.) applied to problems in time-dependent statistical mechanics (82C31)

Related Items (3)

Bottom-Up Transient Time Models in Coarse-Graining Molecular Systems ⋮ Analysing single-molecule trajectories to reconstruct free-energy landscapes of cyclic motor proteins ⋮ Estimation of space-dependent diffusions and potential landscapes from non-equilibrium data

Cites Work

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• Nonequilibrium measurements of free energy differences for microscopically reversible Markovian systems
• Inverse problems: A Bayesian perspective
• Remarks on Drift Estimation for Diffusion Processes
• On the reconstruction of diffusions from first-exit time distributions
• Stochastic Calculus

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