Parametric maximum parsimonious reconstruction on trees

DOI10.1007/S11538-010-9574-8zbMATH Open1228.92057OpenAlexW2038953696WikidataQ51667083 ScholiaQ51667083MaRDI QIDQ644569FDOQ644569

Gilles Didier

Publication date: 4 November 2011

Published in: Bulletin of Mathematical Biology (Search for Journal in Brave)

Full work available at URL: http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.542.2797

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zbMATH Keywords

ancestral state reconstructioncharacter mapping

Mathematics Subject Classification ID

Applications of graph theory (05C90) Problems related to evolution (92D15) Trees (05C05) Dynamic programming (90C39)

Cites Work

• Algebraic Statistics for Computational Biology
• Parametric inference for biological sequence analysis
• Minimal Mutation Trees of Sequences
• Parametric optimization of sequence alignment
• A Procedure for Nonlinear Least Squares Refinement in Adverse Practical Conditions

Cited In (4)

• Generating most parsimonious reconstructions on a tree: A generalization of the Farris-Swofford-Maddison method
• Algebraic properties of the most parsimonious reconstructions of the hypothetical ancestors on a given tree
• Time-dependent-asymmetric-linear-parsimonious ancestral state reconstruction
• Counting ancestral reconstructions in a fixed phylogeny

Uses Software

• Mesquite

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