Quantifying collective motion patterns in mesenchymal cell populations using topological data analysis and agent-based modeling

DOI10.1016/J.MBS.2024.109158MaRDI QIDQ6550776zbMATH OpenFDO

Authors Kyle C. Nguyen, Carter D. Jameson, Scott A. Baldwin, John T. Nardini, Ralph C. Smith, Jason M. Haugh, K. B. Flores

Publication date 5 June 2024

Published in Mathematical Biosciences (Search for Journal in Brave)

zbMATH Keywords

deep learningapproximate Bayesian computationtopological data analysiscell migrationagent-based modeling

Mathematics Subject Classification ID

Artificial neural networks and deep learning (68T07) Cell movement (chemotaxis, etc.) (92C17) Topological data analysis (62R40)

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Cites work

• An evolutionary model of tumor cell kinetics and the emergence of molecular heterogeneity driving Gompertzian growth
• Clique topology reveals intrinsic geometric structure in neural correlations
• Continuum approximations for lattice-free multi-species models of collective cell migration
• Diatomic molecules according to the wave mechanics. II: Vibrational levels.
• Ripser: efficient computation of Vietoris-Rips persistence barcodes
• State transitions and the continuum limit for a 2D interacting, self-propelled particle system
• Visualizing data using t-SNE

Cited in

(2)

• Forecasting and predicting stochastic agent-based model data with biologically-informed neural networks
• How cells stay together: a mechanism for maintenance of a robust cluster explored by local and non-local continuum models

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