Quantifying collective motion patterns in mesenchymal cell populations using topological data analysis and agent-based modeling

DOI10.1016/J.MBS.2024.109158MaRDI QIDQ6550776zbMATH OpenFDO

Authors Kyle C. Nguyen, Carter D. Jameson, Scott A. Baldwin, John T. Nardini, Ralph C. Smith, Jason M. Haugh, K. B. Flores

Publication date 5 June 2024

Published in Mathematical Biosciences (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/J.MBS.2024.109158

zbMATH Keywords

agent-based modelingapproximate Bayesian computationcell migrationdeep learningtopological data analysis

Mathematics Subject Classification ID

Topological data analysis (62R40) Artificial neural networks and deep learning (68T07) Cell movement (chemotaxis, etc.) (92C17)

Recommendations

• Topological data analysis of zebrafish patterns
• Analysis of individual cell trajectories in lattice-gas cellular automaton models for migrating cell populations
• A measure-theoretic model for collective cell migration and aggregation
• Interplay between the persistent random walk and the contact inhibition of locomotion leads to collective cell behaviors
• Reaction-diffusion finite element model of lateral line primordium migration to explore cell leadership

Cites work

• An evolutionary model of tumor cell kinetics and the emergence of molecular heterogeneity driving Gompertzian growth
• Clique topology reveals intrinsic geometric structure in neural correlations
• Continuum approximations for lattice-free multi-species models of collective cell migration
• Diatomic molecules according to the wave mechanics. II: Vibrational levels.
• Ripser: efficient computation of Vietoris-Rips persistence barcodes
• State transitions and the continuum limit for a 2D interacting, self-propelled particle system
• Visualizing data using t-SNE

Cited in

(4)

• How cells stay together: a mechanism for maintenance of a robust cluster explored by local and non-local continuum models
• Forecasting and predicting stochastic agent-based model data with biologically-informed neural networks
• Topological classification of tumour-immune interactions and dynamics
• Intelligent machine learning solutions with Bayesian regularization backpropagation adaptive networks for differential systems of maize streak virus diseases

This page was built for publication: Quantifying collective motion patterns in mesenchymal cell populations using topological data analysis and agent-based modeling

Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q6550776)