Symmetric circular matchings and RNA folding

DOI10.1016/J.DISC.2011.06.004zbMath1232.05180OpenAlexW1985505035WikidataQ56271651 ScholiaQ56271651MaRDI QIDQ658026

Peter F. Stadler, Ivo L. Hofacker, Christian M. Reidys

Publication date: 11 January 2012

Published in: Discrete Mathematics (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.disc.2011.06.004

zbMATH Keywords

energy minimization problemcombinatorics of symmetric secondary structures

Mathematics Subject Classification ID

Edge subsets with special properties (factorization, matching, partitioning, covering and packing, etc.) (05C70) Molecular structure (graph-theoretic methods, methods of differential topology, etc.) (92E10)

Related Items (2)

Enumerating secondary structures and structural moieties for circular RNAs ⋮ Analytic combinatorics of lattice paths with forbidden patterns, the vectorial kernel method, and generating functions for pushdown automata

Cites Work

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• RNA secondary structure: a complete mathematical analysis
• Combinatorics of RNA secondary structures
• Linear trees and RNA secondary structure
• Combinatorics of RNA structures with pseudoknots
• Random k -noncrossing RNA structures
• Thermodynamic Analysis of Interacting Nucleic Acid Strands
• Singularity Analysis of Generating Functions
• Computation of Generating Functions for Biological Molecules
• Algorithms for Loop Matchings

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