Symmetric circular matchings and RNA folding

DOI10.1016/J.DISC.2011.06.004MaRDI QIDQ658026zbMATH OpenOpenAlexWikidataFDO

Authors Ivo L. Hofacker, Christian M. Reidys, Peter F. Stadler

Publication date 11 January 2012

Published in Discrete Mathematics (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.disc.2011.06.004

zbMATH Keywords

energy minimization problemcombinatorics of symmetric secondary structures

Mathematics Subject Classification ID

Edge subsets with special properties (factorization, matching, partitioning, covering and packing, etc.) (05C70) Molecular structure (graph-theoretic methods, methods of differential topology, etc.) (92E10)

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Cites work

• scientific article; zbMATH DE number 3928776 (Why is no real title available?)
• scientific article; zbMATH DE number 3675903 (Why is no real title available?)
• Algorithms for Loop Matchings
• Combinatorics of RNA secondary structures
• Combinatorics of RNA structures with pseudoknots
• Computation of Generating Functions for Biological Molecules
• Linear trees and RNA secondary structure
• RNA secondary structure: a complete mathematical analysis
• Random \(k\)-noncrossing RNA structures
• Singularity Analysis of Generating Functions
• Thermodynamic Analysis of Interacting Nucleic Acid Strands

Cited in

(2)

• Enumerating secondary structures and structural moieties for circular RNAs
• Analytic combinatorics of lattice paths with forbidden patterns, the vectorial kernel method, and generating functions for pushdown automata

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