Symmetric circular matchings and RNA folding

DOI10.1016/J.DISC.2011.06.004zbMATH Open1232.05180OpenAlexW1985505035WikidataQ56271651 ScholiaQ56271651MaRDI QIDQ658026FDOQ658026

Authors: Ivo L. Hofacker, Christian M. Reidys, Peter F. Stadler 

Publication date: 11 January 2012

Published in: Discrete Mathematics (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.disc.2011.06.004

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zbMATH Keywords

energy minimization problemcombinatorics of symmetric secondary structures

Mathematics Subject Classification ID

Edge subsets with special properties (factorization, matching, partitioning, covering and packing, etc.) (05C70) Molecular structure (graph-theoretic methods, methods of differential topology, etc.) (92E10)

Cites Work

• Singularity Analysis of Generating Functions
• Combinatorics of RNA structures with pseudoknots
• Random \(k\)-noncrossing RNA structures
• RNA secondary structure: a complete mathematical analysis
• Title not available (Why is that?)
• Algorithms for Loop Matchings
• Linear trees and RNA secondary structure
• Computation of Generating Functions for Biological Molecules
• Thermodynamic Analysis of Interacting Nucleic Acid Strands
• Combinatorics of RNA secondary structures
• Title not available (Why is that?)

Cited In (2)

• Enumerating secondary structures and structural moieties for circular RNAs
• Analytic combinatorics of lattice paths with forbidden patterns, the vectorial kernel method, and generating functions for pushdown automata

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