Translation by ribosomes with mRNA degradation: exclusion processes on aging tracks

DOI10.1007/S10955-011-0347-ZMaRDI QIDQ658487zbMATH OpenOpenAlexFDO

Authors Apoorva Nagar, A. Valleriani, Reinhard Lipowsky

Publication date 12 January 2012

Published in Journal of Statistical Physics (Search for Journal in Brave)

Copyright license Creative Commons Attribution-NonCommercial 4.0 International

Full work available at URL https://doi.org/10.1007/s10955-011-0347-z

zbMATH Keywords

degradationTASEPmRNA translation

Mathematics Subject Classification ID

Interacting particle systems in time-dependent statistical mechanics (82C22) Statistical mechanics of polymers (82D60)

Recommendations

• Exclusion model of mRNA translation with collision-induced ribosome drop-off
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• Ribosome dwell times and the protein copy number distribution

Cites work

• Exact solution of a 1D asymmetric exclusion model using a matrix formulation
• Phase transitions in an exactly soluble one-dimensional exclusion process
• Relaxation spectrum of the asymmetric exclusion process with open boundaries
• Totally asymmetric exclusion processes with particles of arbitrary size

Cited in

(12)

• Stochastic resetting and linear reaction processes: a continuous time random walk approach
• A MAX-plus model of ribosome dynamics during mRNA translation
• Competitive effects in bacterial mRNA decay
• A deterministic model for non-monotone relationship between translation of upstream and downstream open reading frames
• Totally asymmetric simple exclusion process with resetting
• Stochastic theory of protein synthesis and polysome: ribosome profile on a single mRNA transcript
• Ribosome dwell times and the protein copy number distribution
• Towards a model for protein production rates
• Transient anomalous diffusion in heterogeneous media with stochastic resetting
• Modeling translation in protein synthesis with TASEP: a tutorial and recent developments
• MONOTONIC DYNAMICS OF MRNA DEGRADATION BY TWO PATHWAYS
• Exclusion model of mRNA translation with collision-induced ribosome drop-off

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