Cell design in bacteria as a convex optimization problem

DOI10.1016/J.AUTOMATICA.2011.02.038MaRDI QIDQ665151zbMATH OpenOpenAlexFDO

Authors Anne Goelzer, V. Fromion, Gerard Scorletti

Publication date 5 March 2012

Published in Automatica (Search for Journal in Brave)

Full work available at URL https://hal.inrae.fr/hal-02758318/file/40287_20111115023343816_1.pdf

zbMATH Keywords

convex optimizationsystems biologycell designFBA

Mathematics Subject Classification ID

Convex programming (90C25) Cell biology (92C37)

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Cites work

• Introductory lectures on convex optimization. A basic course.
• Lectures on modern convex optimization. Analysis, algorithms, and engineering applications
• Numerical optimization. Theoretical and practical aspects. Transl. from the French

Cited in

(8)

• Regulatory dynamic enzyme-cost flux balance analysis: a unifying framework for constraint-based modeling
• The steady-state assumption in oscillating and growing systems
• Direct global optimization by cellular exclusion in a bioconcentration problem
• Optimal resource allocation enables mathematical exploration of microbial metabolic configurations
• Qualitative Behavior of a Metabolic Pathway with Hybrid Feedback
• Dynamic optimization of metabolic networks coupled with gene expression
• Enzyme allocation problems in kinetic metabolic networks: optimal solutions are elementary flux modes
• Convex representation of metabolic networks with Michaelis-Menten kinetics

Describes a project that uses

Uses Software

• BRENDA

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