Uncertainty, imprecision, and many-valued logics in protein bioinformatics

DOI10.1016/J.MBS.2018.08.004MaRDI QIDQ669205zbMATH OpenOpenAlexWikidataFDO

Authors Bożena Małysiak-Mrozek

Publication date 20 March 2019

Published in Mathematical Biosciences (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.mbs.2018.08.004

zbMATH Keywords

big datadata explorationdegrees of truthfuzzy logicfuzzy numbersfuzzy setsimprecisionmany-valued logicsprotein analysisprotein bioinformaticsproteinsqueryinguncertainty

Mathematics Subject Classification ID

Fuzzy logic; logic of vagueness (03B52) Theory of fuzzy sets, etc. (03E72) Applications of statistics to biology and medical sciences; meta analysis (62P10) Software, source code, etc. for problems pertaining to biology (92-04) Biochemistry, molecular biology (92C40)

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Cites work

• A computational approach to fuzzy quantifiers in natural languages
• A fuzzy sets based generalization of contact maps for the overlap of protein structures
• A study of entropy/clarity of genetic sequences using metric spaces and fuzzy sets
• Algebraic foundations of many-valued reasoning
• An efficient technique for superfamily classification of amino acid sequences: feature extraction, fuzzy clustering and prototype selection
• Applying a fuzzy sets-based heuristic to the protein structure prediction problem
• Approximate symbolic pattern matching for protein sequence data
• Data grouping process in extended SQL language containing fuzzy elements
• Energy Properties of Protein Structures in the Analysis of the Human RAB5A Cellular Activity
• Foundations of set theory. With the collaboration of Dirk van Dalen. 2nd revised ed
• Fuzzy polynucleotide spaces and metrics
• Fuzzy sets
• scientific article; zbMATH DE number 5316606 (Why is no real title available?)
• scientific article; zbMATH DE number 1209602 (Why is no real title available?)
• scientific article; zbMATH DE number 201040 (Why is no real title available?)
• Many-valued logic and fuzzy set theory
• Matching protein structures with fuzzy alignments
• Protein subcellular location prediction using optimally weighted fuzzy \(k\)-NN algorithm

Cited in

(2)

• Editorial. The application of machine learning to disease diagnosis and treatment
• Applications of fuzzy logic in bioinformatics.

Describes a project that uses

Uses Software

• CUDA
• GlobPlot
• RONN
• IUPred

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