A Voronoi interface approach to cell aggregate electropermeabilization

DOI10.1016/j.jcp.2016.11.048zbMath1378.92015OpenAlexW2558437614MaRDI QIDQ680090

Frédéric Gibou, Arthur Guittet, Clair Poignard

Publication date: 22 January 2018

Published in: Journal of Computational Physics (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.jcp.2016.11.048

zbMATH Keywords

finite volume methodlevel-set methodcell modelingquad/oc-treesharp methodsVoronoi interface approach

Mathematics Subject Classification ID

Cell biology (92C37) Finite volume methods for initial value and initial-boundary value problems involving PDEs (65M08)

Related Items (8)

Solving elliptic interface problems with jump conditions on Cartesian grids ⋮ Efficient calculation of fully resolved electrostatics around large biomolecules ⋮ High-order numerical methods for 2D parabolic problems in single and composite domains ⋮ Geometric discretization of the multidimensional Dirac delta distribution -- application to the Poisson equation with singular source terms ⋮ A review of level-set methods and some recent applications ⋮ A parallel Voronoi-based approach for mesoscale simulations of cell aggregate electropermeabilization ⋮ On MultiScale ADI Methods for Parabolic PDEs with a Discontinuous Coefficient ⋮ Multiple traces formulation and semi-implicit scheme for modelling biological cells under electrical stimulation

Cites Work

• A second-order Cartesian method for the simulation of electropermeabilization cell models
• A second-order discretization of the nonlinear Poisson-Boltzmann equation over irregular geometries using non-graded adaptive Cartesian grids
• A finite element method for interface problems in domains with smooth boundaries and interfaces
• Conducting and permeable states of cell membrane submitted to high voltage pulses: mathematical and numerical studies validated by the experiments
• Fronts propagating with curvature-dependent speed: Algorithms based on Hamilton-Jacobi formulations
• A non-oscillatory Eulerian approach to interfaces in multimaterial flows (the ghost fluid method)
• The immersed finite volume element methods for the elliptic interface problems
• Tree methods for moving interfaces
• Quad trees: A data structure for retrieval by composite keys
• New Cartesian grid methods for interface problems using the finite element formulation
• A Neumann-Neumann algorithm for a mortar discretization of elliptic problems with discontinuous coefficients
• Local level set method in high dimension and codimension
• A boundary condition capturing method for Poisson's equation on irregular domains
• Solving elliptic problems with discontinuities on irregular domains -- the Voronoi interface method
• ``Classical electropermeabilization modeling at the cell scale
• The finite element method for elliptic equations with discontinuous coefficients
• A discontinuous Galerkin method for elliptic interface problems with application to electroporation
• Immersed-Interface Finite-Element Methods for Elliptic Interface Problems with Nonhomogeneous Jump Conditions
• The Immersed Interface Method for Elliptic Equations with Discontinuous Coefficients and Singular Sources
• Convergence of the ghost fluid method for elliptic equations with interfaces
• A Parallel Second Order Cartesian Method for Elliptic Interface Problems
• A mortar element method for elliptic problems with discontinuous coefficients

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