Sequencing by hybridization with isothermic oligonucleotide libraries

DOI10.1016/J.DAM.2003.09.006MaRDI QIDQ705498zbMATH OpenOpenAlexWikidataFDO

Authors Jacek Blazewicz, Piotr Formanowicz, Marta Kasprzak, Wojciech T. Markiewicz

Publication date 31 January 2005

Published in Discrete Applied Mathematics (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.dam.2003.09.006

zbMATH Keywords

DNA sequencingIsothermic oligonucleotide libraries

Mathematics Subject Classification ID

Complexity and performance of numerical algorithms (65Y20) Combinatorics on words (68R15) Biochemistry, molecular biology (92C40) Protein sequences, DNA sequences (92D20)

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Cites work

• Complexity of DNA sequencing by hybridization.
• scientific article; zbMATH DE number 3639144 (Why is no real title available?)
• On finding minimal length superstrings
• On some properties of DNA graphs
• Tabu search for DNA sequencing with false negatives and false positives

Cited in

(16)

• Graph algorithms for DNA sequencing -- origins, current models and the future
• Classification of de Bruijn-based labeled digraphs
• About the design of oligo-chips
• Error analysis of deep sequencing of phage libraries: peptides censored in sequencing
• Resolving power of isothermic DNA sequencing chips
• Computational complexity of isothermic DNA sequencing by hybridization
• Tabu search algorithm for DNA sequencing by hybridization with isothermic libraries
• Multistage isothermic sequencing by hybridization
• An algorithm for isothermic DNA sequencing
• DNA Sequencing by Hybridization via Genetic Search
• scientific article; zbMATH DE number 1953218 (Why is no real title available?)
• scientific article; zbMATH DE number 1953223 (Why is no real title available?)
• Beyond quasi-adjoint graphs: on polynomial-time solvable cases of the Hamiltonian cycle and path problems
• Evolutionary approaches to DNA sequencing with errors
• Characterization of non-crosshybridizing DNA oligonucleotides manufactured in vitro
• Dealing with repetitions in sequencing by hybridization

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