Sequencing by hybridization with isothermic oligonucleotide libraries

DOI10.1016/J.DAM.2003.09.006MaRDI QIDQ705498zbMATH OpenOpenAlexWikidataFDO

Authors Jacek Blazewicz, Piotr Formanowicz, Marta Kasprzak, Wojciech T. Markiewicz

Publication date 31 January 2005

Published in Discrete Applied Mathematics (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.dam.2003.09.006

zbMATH Keywords

DNA sequencingIsothermic oligonucleotide libraries

Mathematics Subject Classification ID

Complexity and performance of numerical algorithms (65Y20) Biochemistry, molecular biology (92C40) Protein sequences, DNA sequences (92D20) Combinatorics on words (68R15)

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Cites work

• scientific article; zbMATH DE number 3639144 (Why is no real title available?)
• Complexity of DNA sequencing by hybridization.
• On finding minimal length superstrings
• On some properties of DNA graphs
• Tabu search for DNA sequencing with false negatives and false positives

Cited in

(15)

• DNA Sequencing by Hybridization via Genetic Search
• scientific article; zbMATH DE number 1953218 (Why is no real title available?)
• scientific article; zbMATH DE number 1953223 (Why is no real title available?)
• Resolving power of isothermic DNA sequencing chips
• Beyond quasi-adjoint graphs: on polynomial-time solvable cases of the Hamiltonian cycle and path problems
• Computational complexity of isothermic DNA sequencing by hybridization
• About the design of oligo-chips
• Graph algorithms for DNA sequencing -- origins, current models and the future
• Error analysis of deep sequencing of phage libraries: peptides censored in sequencing
• Dealing with repetitions in sequencing by hybridization
• An algorithm for isothermic DNA sequencing
• Multistage isothermic sequencing by hybridization
• Evolutionary approaches to DNA sequencing with errors
• Classification of de Bruijn-based labeled digraphs
• Tabu search algorithm for DNA sequencing by hybridization with isothermic libraries

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