Rewriting rule chains modeling DNA rearrangement pathways

DOI10.1016/J.TCS.2012.04.041zbMATH Open1284.68314OpenAlexW1987839619MaRDI QIDQ714800FDOQ714800

Authors: Angela Angeleska, Nataşa Jonoska, Masahico Saito 

Publication date: 11 October 2012

Published in: Theoretical Computer Science (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.tcs.2012.04.041

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zbMATH Keywords

ciliatesassembly pathwaysDNA rearrangementrewriting rules

Mathematics Subject Classification ID

Protein sequences, DNA sequences (92D20) Grammars and rewriting systems (68Q42)

Cites Work

• Gene assembly through cyclic graph decomposition
• Computation in living cells. Gene assembly in ciliates
• Template-guided recombination for IES elimination and unscrambling of genes in stichotrichous ciliates
• RNA-guided DNA assembly
• DNA recombination through assembly graphs
• Title not available (Why is that?)
• Title not available (Why is that?)
• CIRCULARITY AND OTHER INVARIANTS OF GENE ASSEMBLY IN CILIATES

Cited In (3)

• V(D)J recombinase precursors and coding structure of signal sequence directed rearrangement
• Modelling of DNA mismatch repair with a reversible process calculus
• Recurring patterns among scrambled genes in the encrypted genome of the ciliate \textit{Oxytricha trifallax}

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