Rewriting rule chains modeling DNA rearrangement pathways

DOI10.1016/J.TCS.2012.04.041MaRDI QIDQ714800zbMATH OpenOpenAlexFDO

Authors Angela Angeleska, Nataşa Jonoska, Masahico Saito

Publication date 11 October 2012

Published in Theoretical Computer Science (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.tcs.2012.04.041

zbMATH Keywords

ciliatesassembly pathwaysDNA rearrangementrewriting rules

Mathematics Subject Classification ID

Protein sequences, DNA sequences (92D20) Grammars and rewriting systems (68Q42)

Recommendations

• Graphs associated with DNA rearrangements and their polynomials
• Simple gene assembly as a rewriting of directed overlap-inclusion graphs
• DNA recombination through assembly graphs
• DNA rearrangements through spatial graphs
• Formal systems for gene assembly in ciliates.

Cites work

• scientific article; zbMATH DE number 3257167 (Why is no real title available?)
• scientific article; zbMATH DE number 4183450 (Why is no real title available?)
• CIRCULARITY AND OTHER INVARIANTS OF GENE ASSEMBLY IN CILIATES
• Computation in living cells. Gene assembly in ciliates
• DNA recombination through assembly graphs
• Gene assembly through cyclic graph decomposition
• RNA-guided DNA assembly
• Template-guided recombination for IES elimination and unscrambling of genes in stichotrichous ciliates

Cited in

(3)

• V(D)J recombinase precursors and coding structure of signal sequence directed rearrangement
• Recurring patterns among scrambled genes in the encrypted genome of the ciliate \textit{Oxytricha trifallax}
• Modelling of DNA mismatch repair with a reversible process calculus

This page was built for publication: Rewriting rule chains modeling DNA rearrangement pathways

Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q714800)