DNA base pairs openings perturbed by the surrounding medium

DOI10.1016/J.CNSNS.2014.12.001MaRDI QIDQ727059zbMATH OpenOpenAlexFDO

Authors M. Saha, Timoléon C. Kofané

Publication date 6 December 2016

Published in Communications in Nonlinear Science and Numerical Simulation (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.cnsns.2014.12.001

zbMATH Keywords

DNAsolitonviscositydriving forcenoises

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Protein sequences, DNA sequences (92D20)

Recommendations

• Base pairs opening and bubble transport in damped DNA dynamics with transport memory effects
• The structural basis of DNA flexibility
• TUNNELING OF PROTONS AND TAUTOMERIC TRANSITIONS IN BASE PAIRS OF DNA
• Non-linear oscillations of DNA base pairs
• Biomechanics of DNA: rotational oscillations of bases

Cites work

• scientific article; zbMATH DE number 1258146 (Why is no real title available?)
• A coupled base-rotator model for structure and dynamics of DNA -- local fluctuations in helical twist angles and topological solitons.
• Compacton anti-compacton pair for hydrogen bonds and rotational waves in DNA dynamics
• Compacton-like modes in model DNA systems and their bearing on biological functioning
• Davydov soliton evolution in temperature gradients driven by hyperbolic waves
• Envelope solitons perturbed by stochastic noise
• Long-range interactions between adjacent and distant bases in a DNA and their impact on the ribonucleic acid polymerase-DNA dynamics
• NONLINEAR DYNAMICS OF LONG-RANGE PROTEIN-HELICOIDAL DNA INTERACTIONS
• Perturbations of Solitons and Solitary Waves
• The Impact of Viscosity on the DNA Dynamics
• The thermal denaturation of the Peyrard-Bishop model with an external potential

Cited in

(4)

• The Impact of Viscosity on the DNA Dynamics
• Dynamics of saline oscillator under sinusoidal and bounded noise excitation
• Base pairs opening and bubble transport in damped DNA dynamics with transport memory effects
• Nonlinear dynamics and noise actuated by the cycle of gene inactivation in stochastic transcription

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