Trajectories of DNA bubbles

DOI10.1016/J.CHAOS.2015.02.009MaRDI QIDQ727773zbMATH OpenOpenAlexFDO

Authors Andrey A. Grinevich, Artem A. Ryasik, L. V. Yakushevich

Publication date 21 December 2016

Published in Chaos, Solitons and Fractals (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.chaos.2015.02.009

zbMATH Keywords

kinkDNA dynamicsmodified sine-Gordon equationDNA bubble

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Protein sequences, DNA sequences (92D20) Soliton solutions (35C08) PDEs in connection with biology, chemistry and other natural sciences (35Q92)

Recommendations

• Nonlinear waves in double-stranded DNA
• Does the dynamics of sine\,-\,Gordon solitons predict active regions of DNA?
• The influence of the DNA torque on the dynamics of transcription bubbles in plasmid PTTQ18
• Bubble dynamics in DNA
• Coupled sine-Gordon systems in DNA dynamics

Cites work

• Nonlinear DNA dynamics: Hierarchy of the models
• Propagation of twist solitons in fully inhomogeneous DNA chains
• Revisiting Salerno's sine-Gordon model of DNA: active regions and robustness
• Theoretical physics of DNA: new ideas and tendencies in the modeling of the DNA nonlinear dynamics

Cited in

(9)

• Nonlinear waves in double-stranded DNA
• Does the dynamics of sine\,-\,Gordon solitons predict active regions of DNA?
• Bubble dynamics in DNA
• Base pairs opening and bubble transport in damped DNA dynamics with transport memory effects
• The influence of the DNA torque on the dynamics of transcription bubbles in plasmid PTTQ18
• Trajectories of DNA kinks
• Revisiting Salerno's sine-Gordon model of DNA: active regions and robustness
• Scattering of kinks in the \(B\varphi^4\) model
• Loop exponent in DNA bubble dynamics

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