A multiple time stepping algorithm for efficient multiscale modeling of platelets flowing in blood plasma

DOI10.1016/J.JCP.2015.01.004zbMATH Open1351.76327OpenAlexW2006716808WikidataQ35019394 ScholiaQ35019394MaRDI QIDQ729044FDOQ729044

Authors: Peng Zhang, Na Zhang, Yuefan Deng, Danny Bluestein 

Publication date: 20 December 2016

Published in: Journal of Computational Physics (Search for Journal in Brave)

Full work available at URL: http://europepmc.org/articles/pmc4308312

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zbMATH Keywords

multiscale modelingcoarse-grained molecular dynamicsmultiple time stepping

Mathematics Subject Classification ID

Physiological flows (76Z05) Physiological flow (92C35) Numerical algorithms for specific classes of architectures (65Y10)

Cites Work

• Fast parallel algorithms for short-range molecular dynamics
• Title not available (Why is that?)
• Triple-decker: Interfacing atomistic-mesoscopic-continuum flow regimes
• Nonlinear resonance artifacts in molecular dynamics simulations
• A stochastic Trotter integration scheme for dissipative particle dynamics
• Parameterizing the Morse potential for coarse-grained modeling of blood plasma
• Rational construction of stochastic numerical methods for molecular sampling
• Time-dependent and outflow boundary conditions for dissipative particle dynamics
• Error and timing analysis of multiple time-step integration methods for molecular dynamics
• A family of time-staggered schemes for integrating hybrid DPD models for polymers: Algorithms and applications
• Three-dimensional simulations of a platelet-shaped spheroid near a wall in shear flow
• Flipping of an adherent blood platelet over a substrate

Cited In (3)

• Artificial intelligence for accelerating time integrations in multiscale modeling
• Blood platelet production: optimization by dynamic programming and simulation
• Parameterizing the Morse potential for coarse-grained modeling of blood plasma

Uses Software

• NAMD
• LAMMPS

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