A multiple time stepping algorithm for efficient multiscale modeling of platelets flowing in blood plasma

DOI10.1016/J.JCP.2015.01.004MaRDI QIDQ729044zbMATH OpenOpenAlexWikidataFDO

Authors Peng Zhang, Na Zhang, Yuefan Deng, Danny Bluestein

Publication date 20 December 2016

Published in Journal of Computational Physics (Search for Journal in Brave)

Full work available at URL http://europepmc.org/articles/pmc4308312

zbMATH Keywords

coarse-grained molecular dynamicsmultiple time steppingmultiscale modeling

Mathematics Subject Classification ID

Numerical algorithms for specific classes of architectures (65Y10) Physiological flows (76Z05) Physiological flow (92C35)

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Cites work

• A family of time-staggered schemes for integrating hybrid DPD models for polymers: Algorithms and applications
• A stochastic Trotter integration scheme for dissipative particle dynamics
• Error and timing analysis of multiple time-step integration methods for molecular dynamics
• Fast parallel algorithms for short-range molecular dynamics
• Flipping of an adherent blood platelet over a substrate
• scientific article; zbMATH DE number 46777 (Why is no real title available?)
• Nonlinear resonance artifacts in molecular dynamics simulations
• Parameterizing the Morse potential for coarse-grained modeling of blood plasma
• Rational construction of stochastic numerical methods for molecular sampling
• Three-dimensional simulations of a platelet-shaped spheroid near a wall in shear flow
• Time-dependent and outflow boundary conditions for dissipative particle dynamics
• Triple-decker: Interfacing atomistic-mesoscopic-continuum flow regimes

Cited in

(3)

• Artificial intelligence for accelerating time integrations in multiscale modeling
• Blood platelet production: optimization by dynamic programming and simulation
• Parameterizing the Morse potential for coarse-grained modeling of blood plasma

Describes a project that uses

Uses Software

• NAMD
• LAMMPS

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