A multiple time stepping algorithm for efficient multiscale modeling of platelets flowing in blood plasma

DOI10.1016/J.JCP.2015.01.004MaRDI QIDQ729044zbMATHOpenAlexWikidataFDO

Authors Peng Zhang, Na Zhang, Yuefan Deng, Danny Bluestein

Publication date 20 December 2016

Published in Journal of Computational Physics (Search for Journal in Brave)

Full work available at URL http://europepmc.org/articles/pmc4308312

zbMATH Keywords

multiscale modelingcoarse-grained molecular dynamicsmultiple time stepping

Mathematics Subject Classification ID

Physiological flows (76Z05) Physiological flow (92C35) Numerical algorithms for specific classes of architectures (65Y10)

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Cites work

• scientific article; zbMATH DE number 46777 (Why is no real title available?)
• A family of time-staggered schemes for integrating hybrid DPD models for polymers: Algorithms and applications
• A stochastic Trotter integration scheme for dissipative particle dynamics
• Error and timing analysis of multiple time-step integration methods for molecular dynamics
• Fast parallel algorithms for short-range molecular dynamics
• Flipping of an adherent blood platelet over a substrate
• Nonlinear resonance artifacts in molecular dynamics simulations
• Parameterizing the Morse potential for coarse-grained modeling of blood plasma
• Rational construction of stochastic numerical methods for molecular sampling
• Three-dimensional simulations of a platelet-shaped spheroid near a wall in shear flow
• Time-dependent and outflow boundary conditions for dissipative particle dynamics
• Triple-decker: Interfacing atomistic-mesoscopic-continuum flow regimes

Cited in

(3)

• Blood platelet production: optimization by dynamic programming and simulation
• Parameterizing the Morse potential for coarse-grained modeling of blood plasma
• Artificial intelligence for accelerating time integrations in multiscale modeling

Describes a project that uses

Uses Software

• NAMD
• LAMMPS

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