Recognition of structure similarities in proteins

DOI10.1007/S11424-008-9143-5MaRDI QIDQ732827zbMATH OpenOpenAlexFDO

Authors Lin Wang, Yuqing Qiu, Jiguang Wang, Xiangsun Zhang

Publication date 15 October 2009

Published in Journal of Systems Science and Complexity (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/s11424-008-9143-5

zbMATH Keywords

circular permutationsprotein structure alignmentbinding site alignmentflexible alignmentprotein structure retrieval

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Computational methods for problems pertaining to biology (92-08)

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Cites work

• An eigendecomposition approach to weighted graph matching problems

Cited in

(11)

• Automated construction of structural motifs for predicting functional sites on protein structures
• Conformational characterization of disulfide bonds: a tool for protein classification
• Correlation between sequence, structure and function for trisporoid processing proteins in the model zygomycete \textit{Mucor mucedo}
• Matching protein structures with fuzzy alignments
• A note on clustering the functionally-related paralogues and orthologues of proteins: a case of the FK506-binding proteins (FKBPs)
• Invariant features for searching in protein fold databases
• scientific article; zbMATH DE number 2209353 (Why is no real title available?)
• Cavity detection and matching for binding site recognition
• Research in Computational Molecular Biology
• scientific article; zbMATH DE number 2030167 (Why is no real title available?)
• Exploring the limits of fold discrimination by structural alignment: a large scale benchmark using decoys of known fold

Describes a project that uses

Uses Software

• SSAP

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