Theory and applications of a deterministic approximation to the coalescent model

DOI10.1016/J.TPB.2013.12.007MaRDI QIDQ743522zbMATH OpenOpenAlexWikidataFDO

Authors Ethan M. Jewett, Noah A. Rosenberg

Publication date 24 September 2014

Published in Theoretical Population Biology (Search for Journal in Brave)

Full work available at URL http://europepmc.org/articles/pmc4425369

zbMATH Keywords

computational complexitycoalescentapproximation

Mathematics Subject Classification ID

Population dynamics (general) (92D25) Computational difficulty of problems (lower bounds, completeness, difficulty of approximation, etc.) (68Q17)

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Cites work

• scientific article; zbMATH DE number 1764082 (Why is no real title available?)
• A (terse) introduction to Lebesgue integration
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• Coalescent lineage distributions
• Coalescent time distributions in trees of arbitrary size
• Composite likelihood-based inferences on genetic data from dependent loci
• Genealogy of neutral genes in two partially isolated populations
• Genotype imputation in a coalescent model with infinitely-many-sites mutation
• Introduction to nonlinear and global optimization
• Line-of-descent and genealogical processes, and their applications in population genetics models
• Lines of descent in the diffusion approximation of neutral Wright-Fisher models
• Maximum tree: a consistent estimator of the species tree
• On the number of segregating sites in genetical models without recombination
• The age of a mutation in a general coalescent tree
• The probability of topological concordance of gene trees and species trees.
• The transient behaviour of the Moran model in population genetics
• Theoretical Numerical Analysis

Cited in

(14)

• The bounded coalescent model: conditioning a genealogy on a minimum root date
• scientific article; zbMATH DE number 5573172 (Why is no real title available?)
• Asymptotic behaviour of sampling and transition probabilities in coalescent models under selection and parent dependent mutations
• scientific article; zbMATH DE number 1094270 (Why is no real title available?)
• Cross-Multiplicative Coalescent Processes and Applications
• Rigid representations of the multiplicative coalescent with linear deletion
• Coalescent models derived from birth-death processes
• Approximations for Expected Generation Number
• Site pattern probabilities under the multispecies coalescent and a relaxed molecular clock: theory and applications
• Alternatives to the Wright-Fisher model: the robustness of mitochondrial Eve dating
• Exact simulation of coupled Wright–Fisher diffusions
• General theory for stochastic admixture graphs and \(F\)-statistics
• A new combinatorial representation of the additive coalescent
• An efficient algorithm for generating the internal branches of a Kingman coalescent

Describes a project that uses

Uses Software

• FTEC
• iGLASS
• ADZE

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