Bayesian multivariate Poisson abundance models for T-cell receptor data

DOI10.1016/J.JTBI.2013.02.009zbMATH Open1322.92014OpenAlexW1996257718WikidataQ30596900 ScholiaQ30596900MaRDI QIDQ745050FDOQ745050

Authors: Joshua Greene, Marc R. Birtwistle, Leszek Ignatowicz, Grzegorz A. Rempala 

Publication date: 13 October 2015

Published in: Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL: http://europepmc.org/articles/pmc3972257

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zbMATH Keywords

lognormal distributionMAP estimationPoisson abundance modelsspecies diversity estimationT-cell antigen receptors

Mathematics Subject Classification ID

Bayesian inference (62F15) Medical applications (general) (92C50)

Cites Work

• Inference from iterative simulation using multiple sequences
• The multivariate Poisson-log normal distribution
• Title not available (Why is that?)
• Hierarchical Bayesian estimation for the number of species
• Bayesian estimation of the number of species using noninformative priors
• Estimating the Size of a Multinomial Population
• Title not available (Why is that?)
• An introduction to MCMC for machine learning
• Estimating the number of component processes of a superimposed process
• A Bayesian \(\chi^2\) test for goodness-of-fit
• On Fitting the Poisson Lognormal Distribution to Species-Abundance Data
• Model for comparative analysis of antigen receptor repertoires

Cited In (5)

• Detecting T cell activation using a varying dimension Bayesian model
• Mathematical characterization of private and public Immune receptor sequences
• SimBPDD: Simulating differential distributions in Beta-Poisson models, in particular for single-cell RNA sequencing data
• The role of the T-helper/T-suppressor ratio in the adaptive immune response: a dynamical model
• Methods for diversity and overlap analysis in T-cell receptor populations

Uses Software

• R
• sedaR
• JAGS

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