Bayesian multivariate Poisson abundance models for T-cell receptor data

DOI10.1016/J.JTBI.2013.02.009MaRDI QIDQ745050zbMATH OpenOpenAlexWikidataFDO

Authors Joshua Greene, Marc R. Birtwistle, Leszek Ignatowicz, Grzegorz A. Rempala

Publication date 13 October 2015

Published in Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL http://europepmc.org/articles/pmc3972257

zbMATH Keywords

lognormal distributionMAP estimationPoisson abundance modelsspecies diversity estimationT-cell antigen receptors

Mathematics Subject Classification ID

Bayesian inference (62F15) Medical applications (general) (92C50)

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Cites work

• scientific article; zbMATH DE number 1439198 (Why is no real title available?)
• scientific article; zbMATH DE number 961607 (Why is no real title available?)
• A Bayesian \(\chi^2\) test for goodness-of-fit
• An introduction to MCMC for machine learning
• Bayesian estimation of the number of species using noninformative priors
• Estimating the Size of a Multinomial Population
• Estimating the number of component processes of a superimposed process
• Hierarchical Bayesian estimation for the number of species
• Inference from iterative simulation using multiple sequences
• Model for comparative analysis of antigen receptor repertoires
• On Fitting the Poisson Lognormal Distribution to Species-Abundance Data
• The multivariate Poisson-log normal distribution

Cited in

(5)

• Detecting T cell activation using a varying dimension Bayesian model
• The role of the T-helper/T-suppressor ratio in the adaptive immune response: a dynamical model
• Methods for diversity and overlap analysis in T-cell receptor populations
• SimBPDD: Simulating differential distributions in Beta-Poisson models, in particular for single-cell RNA sequencing data
• Mathematical characterization of private and public Immune receptor sequences

Describes a project that uses

Uses Software

• R
• sedaR
• JAGS

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