Torsion of DNA modeled as a heterogeneous fluctuating rod

DOI10.1016/J.JMPS.2013.09.020MaRDI QIDQ748727zbMATH OpenOpenAlexFDO

Authors David Argudo, Prashant K. Purohit

Publication date 30 October 2015

Published in Journal of the Mechanics and Physics of Solids (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.jmps.2013.09.020

zbMATH Keywords

DNAphase transitionsstatistical mechanicsheterogeneous elastic materialsingle-molecule experiments

Mathematics Subject Classification ID

Protein sequences, DNA sequences (92D20) Structured surfaces and interfaces, coexistent phases (74A50) Rods (beams, columns, shafts, arches, rings, etc.) (74K10) Phase transitions (general) in equilibrium statistical mechanics (82B26)

Recommendations

• A NOTE ON THE ANALYSIS OF A HETEROGENEOUS ROD-LIKE CHAIN IN DNA MODELING
• Plectoneme formation in twisted fluctuating rods
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• Thermal fluctuations of small rings of intrinsically helical DNA treated like an elastic rod

Cites work

• A double-strand elastic rod theory
• Conformational analysis of stiff chiral polymers with end-constraints
• Helical and localised buckling in twisted rods: A unified analysis of the symmetric case
• Helices
• Nonlinear dynamics and loop formation in Kirchhoff rods with implications to the mechanics of DNA and cables
• The Writhing Number of a Space Curve
• The structural basis of DNA flexibility
• Thermomechanics of a heterogeneous fluctuating chain

Cited in

(10)

• Thermomechanics of a heterogeneous fluctuating chain
• Looping mechanics of rods and DNA with non-homogeneous and discontinuous stiffness
• Plectoneme formation in twisted fluctuating rods
• scientific article; zbMATH DE number 903049 (Why is no real title available?)
• Twisting short dsDNA with applied tension
• Writhe of DNA induced by a terminal twist
• A NOTE ON THE ANALYSIS OF A HETEROGENEOUS ROD-LIKE CHAIN IN DNA MODELING
• Robust estimation of nonlinear constitutive law from static equilibrium data for modeling the mechanics of DNA
• Theory of self–contact in Kirchhoff rods with applications to supercoiling of knotted and unknotted DNA plasmids
• Application of perturbation theory to elastic models of DNA

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