DEMSIM: a discrete event based mechanistic simulation platform for gene expression and regulation dynamics

DOI10.1016/J.JTBI.2004.07.020MaRDI QIDQ776443zbMATH OpenOpenAlexWikidataFDO

Authors Madhukar S. Dasika, Anshuman Gupta, Costas D. Maranas

Publication date 9 July 2020

Published in Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.jtbi.2004.07.020

zbMATH Keywords

stochasticitygene networksdiscrete event simulation

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40)

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Cites work

• Inferring gene regulatory networks from time-ordered gene expression data of bacillus subtilis using differential equations
• Parallel discrete-event simulation applications
• The topology of the regulatory interactions predicts the expression pattern of the segment polarity genes in \textit{Drosophila melanogaster}

Cited in

(2)

• DEMSIM
• Coarse-grained optimization-driven design and piecewise linear modeling of synthetic genetic circuits

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