DEMSIM: a discrete event based mechanistic simulation platform for gene expression and regulation dynamics

DOI10.1016/J.JTBI.2004.07.020zbMATH Open1442.92049OpenAlexW2043124217WikidataQ51595627 ScholiaQ51595627MaRDI QIDQ776443FDOQ776443

Authors: Madhukar S. Dasika, Anshuman Gupta, Costas D. Maranas 

Publication date: 9 July 2020

Published in: Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.jtbi.2004.07.020

Recommendations

• Steady-state-preserving simulation of genetic regulatory systems
• Qualitative simulation of genetic regulatory networks using piecewise-linear models
• Modelling gene expression using stochastic simulation
• Nonlinear and temporal multiscale dynamics of gene regulatory networks: a qualitative simulator
• scientific article; zbMATH DE number 2144778
• HSIM: a hybrid stochastic simulation system for systems biology
• KINSOLVER: A simulator for computing large ensembles of biochemical and gene regulatory networks
• Mathematical simulation of molecular-genetic and cellular system mechanisms regulation

zbMATH Keywords

stochasticitygene networksdiscrete event simulation

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40)

Cites Work

• The topology of the regulatory interactions predicts the expression pattern of the segment polarity genes in \textit{Drosophila melanogaster}
• Inferring gene regulatory networks from time-ordered gene expression data of bacillus subtilis using differential equations
• Parallel discrete-event simulation applications

Cited In (2)

• DEMSIM
• Coarse-grained optimization-driven design and piecewise linear modeling of synthetic genetic circuits

This page was built for publication: DEMSIM: a discrete event based mechanistic simulation platform for gene expression and regulation dynamics

Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q776443)