On realizing shapes in the theory of RNA neutral networks

DOI10.1016/J.JTBI.2005.03.006MaRDI QIDQ776594zbMATH OpenOpenAlexWikidataFDO

Authors Peter Clote, Leszek Gąsieniec, Evangelos Kranakis, D. Krizanc, Roman Kolpakov

Publication date 9 July 2020

Published in Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.jtbi.2005.03.006

zbMATH Keywords

NP-completenessneutral networkNussinov-Jacobson energy modelRNA conformational switch

Mathematics Subject Classification ID

Protein sequences, DNA sequences (92D20) Analysis of algorithms and problem complexity (68Q25)

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Cites work

• scientific article; zbMATH DE number 3639144 (Why is no real title available?)
• Generic properties of combinatory maps: Neutral networks of RNA secondary structures
• Introduction to algorithms

Cited in

(8)

• Combinatorial RNA design: designability and structure-approximating algorithm
• On the problem of reconstructing a mixture of \textsc{rna} structures
• Neutral networks of sequence to shape maps
• Efficient design of compact unstructured RNA libraries covering all \(k\)-mers
• Balancing minimum free energy and codon adaptation index for Pareto optimal RNA design
• An infinite class of unsaturated rooted trees corresponding to designable RNA secondary structures
• scientific article; zbMATH DE number 426425 (Why is no real title available?)
• Combinatorial RNA design: designability and structure-approximating algorithm in Watson-Crick and Nussinov-Jacobson energy models

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