Structural conserved moiety splitting of a stoichiometric matrix

DOI10.1016/j.jtbi.2020.110276zbMath1455.92060OpenAlexW3018845673WikidataQ93222523 ScholiaQ93222523MaRDI QIDQ827814

Ronan M. T. Fleming, Hulda S. Haraldsdóttir, Masoud Ahookhosh, Susan Ghaderi, Sylvain Arreckx

Publication date: 13 January 2021

Published in: Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.jtbi.2020.110276

zbMATH Keywords

hypergraphmathematical modellingreaction networkconserved moietymoiety matrix splittingstoichiometric matrix

Mathematics Subject Classification ID

Hypergraphs (05C65) Biochemistry, molecular biology (92C40) Systems biology, networks (92C42)

Cites Work

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• Conditions for duality between fluxes and concentrations in biochemical networks
• Mass conserved elementary kinetics is sufficient for the existence of a non-equilibrium steady state concentration
• Maintaining LU factors of a general sparse matrix
• A variational principle for computing nonequilibrium fluxes and potentials in genome-scale biochemical networks
• Local convergence of the Levenberg-Marquardt method under Hölder metric subregularity
• Systems Biology
• Multiple Equilibria in Complex Chemical Reaction Networks: II. The Species-Reaction Graph

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