Convex hulls of orbits and orientations of a moving protein domain

DOI10.1007/S00454-008-9076-8zbMATH Open1194.92027arXiv0712.3777OpenAlexW2131878561MaRDI QIDQ848852FDOQ848852

Frank Sottile, Marco Longinetti, Luca Sgheri

Publication date: 23 February 2010

Published in: Discrete \& Computational Geometry (Search for Journal in Brave)

Abstract: We study the facial structure and Carath'eodory number of the convex hull of an orbit of the group of rotations in R^3 acting on the space of pairs of anisotropic symmetric 3 imes 3 tensors. This is motivated by the problem of determining the structure of some proteins in aqueous solution.

Full work available at URL: https://arxiv.org/abs/0712.3777

Recommendations

• Convex geometry of orbits
• ORBITOPES
• Conformational freedom of proteins and the maximal probability of sets of orientations
• Reconstruction of orientations of a moving protein domain from paramagnetic data
• Semidefinite Descriptions of the Convex Hull of Rotation Matrices

zbMATH Keywords

representationscompact group[https://portal.mardi4nfdi.de/w/index.php?title=+Special%3ASearch&search=Carath%EF%BF%BD%EF%BF%BDodory+number&go=Go Carath��odory number]magnetic susceptibility tensor

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Compact groups (22C05) Biophysics (92C05) General convexity (52A99)

Cites Work

• Title not available (Why is that?)
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• The quadratic moment problem for the unit circle and unit disk
• Uniqueness and degeneracy in the localization of rigid structural elements in paramagnetic proteins
• Reconstruction of orientations of a moving protein domain from paramagnetic data
• Efficient determination of the most favoured orientations of protein domains from paramagnetic NMR data
• Generalizations of a theorem of Carathéodory

Cited In (4)

• ORBITOPES
• Semidefinite Descriptions of the Convex Hull of Rotation Matrices
• Looking for central tendencies in the conformational freedom of proteins using NMR measurements
• Barycenters of points in polytope skeleta

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