Sequence-driven features for prediction of subcellular localization of proteins

DOI10.1016/J.PATCOG.2006.02.021zbMATH Open1103.68764OpenAlexW2096819281MaRDI QIDQ850129FDOQ850129

Authors: Jong Kyoung Kim, Sung Yang Bang, Seungjin Choi 

Publication date: 15 November 2006

Published in: Pattern Recognition (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.patcog.2006.02.021

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zbMATH Keywords

support vector machineprotein sequence feature extractionsubcellular localization prediction

Mathematics Subject Classification ID

Learning and adaptive systems in artificial intelligence (68T05) Pattern recognition, speech recognition (68T10)

Cites Work

• Biological Sequence Analysis
• Title not available (Why is that?)
• Constructing support vector machine ensemble.
• Statistical methods in bioinformatics. An introduction.

Cited In (10)

• Calibrating the classifier for protein family prediction with protein sequence using machine learning techniques: An empirical investigation
• Robust numerical features for description and classification of subcellular location patterns in fluorescence microscope images
• A Class of New Kernels Based on High-Scored Pairs of k-Peptides for SVMs and Its Application for Prediction of Protein Subcellular Localization
• Computational Science – ICCS 2005
• Comparison among feature extraction methods for HIV-1 protease cleavage site prediction
• Using nearest feature line and tunable nearest neighbor methods for prediction of protein subcellular locations
• Prediction of protein subcellular location using hydrophobic patterns of amino acid sequence
• Applying sequential rules to protein localization prediction
• Subsequence-based feature map for protein function classification
• Protein subcellular location prediction using optimally weighted fuzzy \(k\)-NN algorithm

Uses Software

• Clustal X
• ESLpred
• AAindex

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