An efficient top-down search algorithm for learning Boolean networks of gene expression

DOI10.1007/S10994-006-9014-ZMaRDI QIDQ851876zbMATH OpenOpenAlexFDO

Authors Dougu Nam, Seung-Hyun Seo, Sang Soo Kim

Publication date 22 November 2006

Published in Machine Learning (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/s10994-006-9014-z

zbMATH Keywords

Boolean networkdata consistencycoupon collection problemcore searchrandom superset selection

Mathematics Subject Classification ID

Learning and adaptive systems in artificial intelligence (68T05) Problem solving in the context of artificial intelligence (heuristics, search strategies, etc.) (68T20) Systems biology, networks (92C42)

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Cites work

• scientific article; zbMATH DE number 1033382 (Why is no real title available?)
• A simple greedy algorithm for finding functional relations: Efficient implementation and average case analysis
• Error-free and best-fit extensions of partially defined Boolean functions
• On learning gene regulatory networks under the Boolean network model
• Performance analysis of a greedy algorithm for inferring Boolean functions

Cited in

(13)

• Improved time complexities for learning Boolean networks
• Temporal Boolean network models of genetic networks and their inference from gene expression time series.
• Redefinition of mutual information in the fuzzy sets framework for computational genomics
• Identification of Boolean control networks
• An efficient approach of attractor calculation for large-scale Boolean gene regulatory networks
• Parameter learning of stochastic Boolean networks
• New results on model reconstruction of Boolean networks with application to gene regulatory networks
• On learning gene regulatory networks under the Boolean network model
• On identification of Boolean control networks
• Parameter estimation for Boolean models of biological networks
• Differentiable learning of matricized DNFs and its application to Boolean networks
• A computational algebra approach to the reverse engineering of gene regulatory networks
• An empirical comparison of popular structure learning algorithms with a view to gene network inference

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