Identification of functional modules in a PPI network by clique percolation clustering

DOI10.1016/J.COMPBIOLCHEM.2006.10.001MaRDI QIDQ884281zbMATH OpenOpenAlexDBLPWikidataFDO

Authors Xuemei Ning, Shihua Zhang, Xiangsun Zhang

Publication date 13 June 2007

Published in Computational Biology and Chemistry (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.compbiolchem.2006.10.001

zbMATH Keywords

Network clusteringProtein complexesProtein-protein Interaction (PPI) network

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Computational methods for problems pertaining to biology (92-08)

Recommendations

• A network hierarchy-based method for functional module detection in protein-protein interaction networks
• Partitioning a PPI network into overlapping modules constrained by high-density and periphery tracking
• Spectral clustering for detecting protein complexes in protein-protein interaction (PPI) networks
• Protein complex identification based on weighted PPI network with multi-source information
• \(k\)-partite cliques of protein interactions: a novel subgraph topology for functional coherence analysis on PPI networks

Cites work

• Community structure in social and biological networks

Cited in

(9)

• Dynamic modularization assessment in affine protein interaction networks
• A survey of computational methods in protein-protein interaction networks
• A technique for the concept-based detection of functional modules in an interaction network
• Identification of the tissue specific protein complexes
• \(k\)-partite cliques of protein interactions: a novel subgraph topology for functional coherence analysis on PPI networks
• Spectral clustering for detecting protein complexes in protein-protein interaction (PPI) networks
• Partitioning a PPI network into overlapping modules constrained by high-density and periphery tracking
• MCC: a multiple consensus clustering framework
• Bio-entity network for analysis of protein-protein interaction networks

Describes a project that uses

Uses Software

• BioLayout
• MCODE
• CFinder

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