An algebraic-combinatorial model for the identification and mapping of biochemical pathways

DOI10.1006/BULM.2001.0263MaRDI QIDQ886927zbMATH OpenOpenAlexWikidataFDO

Authors Joseph S. Oliveira, Colin G. Bailey, Janet B. Jones-Oliveira, David A. Dixon

Publication date 27 October 2015

Published in Bulletin of Mathematical Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1006/bulm.2001.0263

zbMATH Keywords

biochemical pathwaysconnectivity matrixflux conservation lawsoriented matroidPetri nets

Mathematics Subject Classification ID

Combinatorial aspects of matroids and geometric lattices (05B35) Hypergraphs (05C65) Applications of graph theory (05C90) Biochemistry, molecular biology (92C40)

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Cited in

(6)

• Algebraic methods for inferring biochemical networks: a maximum likelihood approach
• Modelling biochemical pathways through enhanced -calculus
• Thermodynamic constraints for biochemical networks
• Identification of components in biochemical pathways: extensive aqpplication to SBML models
• Enzyme allocation problems in kinetic metabolic networks: optimal solutions are elementary flux modes
• PoCaB: A Software Infrastructure to Explore Algebraic Methods for Bio-chemical Reaction Networks

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