Solving the chemical master equation by a fast adaptive finite state projection based on the stochastic simulation algorithm
DOI10.1016/J.MBS.2015.08.010zbMATH Open1351.92018OpenAlexW1137540706WikidataQ50861553 ScholiaQ50861553MaRDI QIDQ900714FDOQ900714
Authors: Roger B. Sidje, H. D. Vo 
Publication date: 22 December 2015
Published in: Mathematical Biosciences (Search for Journal in Brave)
Full work available at URL: https://doi.org/10.1016/j.mbs.2015.08.010
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Cites Work
- Expokit
- A multiple time interval finite state projection algorithm for the solution to the chemical master equation
- Multiscale Modeling of Chemical Kinetics via the Master Equation
- Modeling and Simulating Chemical Reactions
- Solving the chemical master equation by a fast adaptive finite state projection based on the stochastic simulation algorithm
Cited In (17)
- Data-driven method for efficient characterization of rare event probabilities in biochemical systems
- Implementation of variable parameters in the Krylov-based finite state projection for solving the chemical master equation
- A review of stochastic and delay simulation approaches in both time and space in computational cell biology
- A dynamical low-rank approach to solve the chemical master equation for biological reaction networks
- An Adaptive Method for Solving Chemical Master Equations using a Sparse Wavelet Basis
- Conditional Monte Carlo for reaction networks
- A shift and invert reorthogonalization Arnoldi algorithm for solving the chemical master equation
- Solving the chemical master equation by a fast adaptive finite state projection based on the stochastic simulation algorithm
- The exit time finite state projection scheme: bounding exit distributions and occupation measures of continuous-time Markov chains
- Block-tridiagonal state-space realization of chemical master equations: a tool to compute explicit solutions
- Solving stochastic chemical kinetics by metropolis-Hastings sampling
- Finite state projection for approximating the stationary solution to the chemical master equation using reaction rate equations
- Radial basis function collocation for the chemical master equation
- A multiple time interval finite state projection algorithm for the solution to the chemical master equation
- The high-dimensional matrix equation for biochemical reaction systems
- Accurate chemical master equation solution using multi-finite buffers
- An improved finite state projection algorithm for the numerical solution of the chemical master equation with applications
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