On biological validity indices for soft clustering algorithms for gene expression data

DOI10.1016/J.CSDA.2010.12.003MaRDI QIDQ901585zbMATHOpenAlexFDO

Authors Han-Ming Wu

Publication date 12 January 2016

Published in Computational Statistics and Data Analysis (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.csda.2010.12.003

zbMATH Keywords

gene expressionfuzzy clusteringmicroarray data analysissoft clusteringfuzzy c-meansbiological validity indicesfuzzy cluster validity

Mathematics Subject Classification ID

Classification and discrimination; cluster analysis (statistical aspects) (62H30) Applications of statistics to biology and medical sciences; meta analysis (62P10) Multivariate analysis and fuzziness (62H86)

Recommendations

• Advances in Intelligent Data Analysis VI
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Cites work

• scientific article; zbMATH DE number 3793445 (Why is no real title available?)
• A Fuzzy Relative of the ISODATA Process and Its Use in Detecting Compact Well-Separated Clusters
• Cluster-wise assessment of cluster stability
• Consensus clustering: A resampling-based method for class discovery and visualization of gene expression microarray data
• FUZZY SHELL-CLUSTERING AND APPLICATIONS TO CIRCLE DETECTION IN DIGITAL IMAGES
• Finding Groups in Data
• Model-Based Clustering, Discriminant Analysis, and Density Estimation
• Separation index and partial membership for clustering
• Silhouettes: a graphical aid to the interpretation and validation of cluster analysis

Cited in

(11)

• Multiple hypothesis testing and clustering with mixtures of non-central \(t\)-distributions applied in microarray data analysis
• scientific article; zbMATH DE number 2070741 (Why is no real title available?)
• Stability-based validation of bicluster solutions
• Cluster validation techniques for genome expression data
• Multiple suboptimal solutions for prediction rules in gene expression data
• Advances in Intelligent Data Analysis VI
• scientific article; zbMATH DE number 1750190 (Why is no real title available?)
• Fuzzy Bayesian validation for cluster analysis of yeast cell-cycle data
• Evolutionary fuzzy cluster analysis with Bayesian validation of gene expression profiles
• Spontaneous clustering via minimum gamma-divergence
• Comparison of clustering algorithms on generalized propensity score in observational studies: a simulation study

Describes a project that uses

Uses Software

• R
• Silhouettes
• e1071
• clue
• clValid
• clusfind
• clustervalidation

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