Exact Markov chain and approximate diffusion solution for haploid genetic drift with one-way mutation

DOI10.1016/J.MBS.2015.12.006MaRDI QIDQ905832zbMATH OpenOpenAlexWikidataFDO

Authors Peder A. Tyvand, Ola G. Hössjer, Touvia Miloh

Publication date 28 January 2016

Published in Mathematical Biosciences (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.mbs.2015.12.006

zbMATH Keywords

Markov chainJordan decompositiondiffusionmutationWright-Fisher modelquasi-fixation

Mathematics Subject Classification ID

Applications of Markov chains and discrete-time Markov processes on general state spaces (social mobility, learning theory, industrial processes, etc.) (60J20) Genetics and epigenetics (92D10) Problems related to evolution (92D15)

Recommendations

• Exact solution of the multi-allelic diffusion model
• Comparison and content of the Wright-Fisher model of random genetic drift, the diffusion approximation, and an intermediate model
• Exact Markov chains versus diffusion theory for haploid random mating
• A general solution of the Wright-Fisher model of random genetic drift
• An approximate stationary solution for multi-allele neutral diffusion with low mutation rates

Cites work

• scientific article; zbMATH DE number 3119656 (Why is no real title available?)
• scientific article; zbMATH DE number 3148873 (Why is no real title available?)
• scientific article; zbMATH DE number 3863589 (Why is no real title available?)
• scientific article; zbMATH DE number 3951715 (Why is no real title available?)
• scientific article; zbMATH DE number 1223605 (Why is no real title available?)
• scientific article; zbMATH DE number 3240796 (Why is no real title available?)
• scientific article; zbMATH DE number 3283153 (Why is no real title available?)
• scientific article; zbMATH DE number 3347411 (Why is no real title available?)
• scientific article; zbMATH DE number 3390587 (Why is no real title available?)
• scientific article; zbMATH DE number 3069600 (Why is no real title available?)
• A transition density expansion for a multi-allele diffusion model
• Allele frequencies in multidimensional Wright-Fisher models with a general symmetric mutation structure
• Average time until fixation of a mutant allele in a finite population under continued mutation pressure: Studies by analytical, numerical, and pseudo-sampling methods
• Comparison and content of the Wright-Fisher model of random genetic drift, the diffusion approximation, and an intermediate model
• Diffusion models in population genetics
• Diffusion processes and coalescent trees
• Equations différentielles provenant de la genetique des populations
• Error estimate for the diffusion approximation of the Wright--Fisher model.
• Exact Markov chains versus diffusion theory for haploid random mating
• Exact solution of the multi-allelic diffusion model
• Formulas for diffusion approximations of some gene frequency models
• Line-of-descent and genealogical processes, and their applications in population genetics models
• Lines of descent in the diffusion approximation of neutral Wright-Fisher models
• Mathematical population genetics. I: Theoretical introduction.
• Numerical results and diffusion approximations in a genetic process
• Probability Models for DNA Sequence Evolution
• Quasi-stationary distributions. Markov chains, diffusions and dynamical systems.
• Revisiting the time until fixation of a neutral mutant in a finite population -- a coalescent theory approach
• SOLUTION OF A PROCESS OF RANDOM GENETIC DRIFT WITH A CONTINUOUS MODEL
• Singular solutions of the diffusion equation of population genetics
• The Adequacy of the Diffusion Approximation to Certain Distributions in Genetics
• The Differential Equation of the Distribution of Gene Frequencies
• The latent roots of certain Markov chains arising in genetics: A new approach, I. Haploid models
• The transition function of a Fleming-Viot process
• Theoretical foundation of population genetics at the molecular level

Cited in

(5)

• Exact simulation of coupled Wright–Fisher diffusions
• On simulating the short and long memory of ergodic Markov and non-Markov genetic diffusion processes on the long run
• Exact Markov chains versus diffusion theory for haploid random mating
• Behavior of different numerical schemes for random genetic drift
• Singular solutions of the diffusion equation of population genetics

This page was built for publication: Exact Markov chain and approximate diffusion solution for haploid genetic drift with one-way mutation

Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q905832)