A small trip in the untranquil world of genomes: a survey on the detection and analysis of genome rearrangement breakpoints

DOI10.1016/J.TCS.2008.01.014MaRDI QIDQ932313zbMATH OpenOpenAlexFDO

Authors C. Lemaitre, Marie-France Sagot

Publication date 10 July 2008

Published in Theoretical Computer Science (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.tcs.2008.01.014

zbMATH Keywords

breakpoint regionconserved segmentgenome dynamicssynteny blockwhole genome alignment

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Genetics and epigenetics (92D10) Problems related to evolution (92D15)

Recommendations

• The complexity of genome rearrangement combinatorics under the infinite sites model
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• scientific article; zbMATH DE number 1728477
• Combinatorics of genome rearrangements.
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Cites work

• An algorithm for the distance between two finite sequences
• Reconstructing an ancestral genome using minimum segments duplications and reversals.

Cited in

(6)

• V(D)J recombinase precursors and coding structure of signal sequence directed rearrangement
• scientific article; zbMATH DE number 1961977 (Why is no real title available?)
• Clustering of Translocation Breakpoints
• Textual data compression in computational biology: algorithmic techniques
• Fixation of chromosomal rearrangements
• Comparative Genomics

Describes a project that uses

Uses Software

• BLASTZ
• LAGAN
• Mauve
• BLAT
• AVID

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