Mixed-up trees: the structure of phylogenetic mixtures

DOI10.1007/s11538-007-9293-yzbMath1144.92033arXiv0705.4328OpenAlexW2137668707WikidataQ51897354 ScholiaQ51897354MaRDI QIDQ942916

Elchanan Mossel, Frederick A. IV Matsen, Mike A. Steel

Publication date: 8 September 2008

Published in: Bulletin of Mathematical Biology (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/0705.4328

zbMATH Keywords

polytopediscrete Fourier analysismixture modelphylogeneticsmodel identifiability

Mathematics Subject Classification ID

Trees (05C05) Problems related to evolution (92D15) (n)-dimensional polytopes (52B11) Polytopes and polyhedra (52B99)

Related Items (11)

Phylogenetic trees ⋮ Identifiability and inference of non-parametric rates-across-sites models on large-scale phylo\-genies ⋮ Tropical mixtures of star tree metrics ⋮ Phylogenetic mixtures: concentration of measure in the large-tree limit ⋮ Identifiability of large phylogenetic mixture models ⋮ Identifiability of a Markovian model of molecular evolution with gamma-distributed rates ⋮ Identifiability in phylogenetics using algebraic matroids ⋮ Phylogenetic mixtures and linear invariants for equal input models ⋮ Identifiability of 3-class Jukes-Cantor mixtures ⋮ How probable is common ancestry according to different evolutionary processes? ⋮ Population recovery and partial identification

Uses Software

• polymake

Cites Work

• A canonical decomposition theory for metrics on a finite set
• A phase transition for a random cluster model on phylogenetic trees.
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