Computational methods for yeast prion curing curves

DOI10.1016/J.MBS.2008.07.008MaRDI QIDQ954066zbMATH OpenOpenAlexWikidataFDO

Authors Martin S. Ridout

Publication date 7 November 2008

Published in Mathematical Biosciences (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.mbs.2008.07.008

zbMATH Keywords

renewal processfast Fourier transformage-dependent branching processSaccharomyces cerevisiaeLaplace transform numerical transform inversion

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Applications of branching processes (60J85) Numerical methods for wavelets (65T60) Numerical methods for integral transforms (65R10)

Recommendations

• A Discrete-Time Branching Process Model of Yeast Prion Curing Curves*
• Estimating the number of prions in yeast cells
• Models for yeast prions
• Estimating the rate of prion aggregate amplification in yeast with a generation and structured population model
• Kinetic models of guanidine hydrochloride-induced curing of the yeast \([\mathrm{PSI}^+]\) prion
• A Crump-Mode-Jagers branching process model of prion loss in yeast
• Analysis of a model for the dynamics of prions
• A mathematical analysis of the dynamics of prion proliferation
• On the solvability of a mathematical model for prion proliferation
• Analysis of a model for the dynamics of prions. II

Cites work

• scientific article; zbMATH DE number 3168165 (Why is no real title available?)
• scientific article; zbMATH DE number 1424149 (Why is no real title available?)
• scientific article; zbMATH DE number 3190745 (Why is no real title available?)
• A first course in stochastic models.
• Estimating the number of prions in yeast cells
• Immortal branching Markov processes: Averaging properties and PCR applications.
• Modelling Cell Generation Times by Using the Tempered Stable Distribution
• Modelling yeast cell growth using stochastic branching processes
• Models for yeast prions
• Multi-precision Laplace transform inversion
• NUMERICAL TRANSFORM INVERSION USING GAUSSIAN QUADRATURE
• Numerical Inversion of Laplace Transforms by Relating Them to the Finite Fourier Cosine Transform
• Numerical methods for Laplace transform inversion
• Probabilistic Scaling for the Numerical Inversion of Nonprobability Transforms
• Survival models for heterogeneous populations derived from stable distributions

Cited in

(5)

• Kinetic models of guanidine hydrochloride-induced curing of the yeast \([\mathrm{PSI}^+]\) prion
• Models for yeast prions
• A Discrete-Time Branching Process Model of Yeast Prion Curing Curves*
• [\textit{PSI}]-CIC: a deep-learning pipeline for the annotation of sectored \textit{saccharomyces cerevisiae} colonies
• Estimating the number of prions in yeast cells

Describes a project that uses

Uses Software

• MCQueue
• Matlab

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