A permutation test for determining significance of clusters with applications to spatial and gene expression data

DOI10.1016/J.CSDA.2009.05.031MaRDI QIDQ961928zbMATH OpenOpenAlexDBLPWikidataFDO

Authors B. E. Eshmatov

Publication date 1 April 2010

Published in Computational Statistics and Data Analysis (Search for Journal in Brave)

Full work available at URL http://europepmc.org/articles/pmc3023458

Mathematics Subject Classification ID

Computational methods for problems pertaining to statistics (62-08) Classification and discrimination; cluster analysis (statistical aspects) (62H30) Applications of statistics to biology and medical sciences; meta analysis (62P10)

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Cites work

• scientific article; zbMATH DE number 3787821 (Why is no real title available?)
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• scientific article; zbMATH DE number 558543 (Why is no real title available?)
• scientific article; zbMATH DE number 2061729 (Why is no real title available?)
• scientific article; zbMATH DE number 3030169 (Why is no real title available?)
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• A new algorithm for hybrid hierarchical clustering with visualization and the bootstrap
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• CERTAIN GENERALIZATIONS IN THE ANALYSIS OF VARIANCE
• Consensus clustering: A resampling-based method for class discovery and visualization of gene expression microarray data
• Identifying genuine clusters in a classification
• Measuring the influence of individual data points in a cluster analysis.
• Multi-response permutation procedures for a priori classifications
• Non-uniqueness and Inversions in Cluster Analysis
• On a Test of Whether one of Two Random Variables is Stochastically Larger than the Other
• Permutation, parametric and bootstrap tests of hypotheses.
• Statistical Tests Based on Permutations of the Observations

Cited in

(7)

• Identification of target clusters by using the restricted normal mixture model
• Post-clustering difference testing: valid inference and practical considerations with applications to ecological and biological data
• Minimax optimality of permutation tests
• DESPOTA: dendrogram slicing through a pemutation test approach
• A permutation test motivated by microarray data analysis
• Nonparametric cluster significance testing with reference to a unimodal null distribution
• Statistical Significance for Hierarchical Clustering

Describes a project that uses

Uses Software

• GenClust
• dynamicTreeCut

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