Funnels in energy landscapes

DOI10.1140/EPJB/E2008-00136-7zbMATH Open1189.60137OpenAlexW3098158996WikidataQ56991057 ScholiaQ56991057MaRDI QIDQ978649FDOQ978649

Authors Konstantin Klemm, C. Flamm, Peter F. Stadler 

Publication date 25 June 2010

Published in The European Physical Journal B. Condensed Matter and Complex Systems (Search for Journal in Brave)

Full work available at URL https://arxiv.org/abs/0707.3719

Mathematics Subject Classification ID

Applications of Markov chains and discrete-time Markov processes on general state spaces (social mobility, learning theory, industrial processes, etc.) (60J20) Molecular structure (graph-theoretic methods, methods of differential topology, etc.) (92E10)

Abstract: Local minima and the saddle points separating them in the energy landscape are known to dominate the dynamics of biopolymer folding. Here we introduce a notion of a "folding funnel" that is concisely defined in terms of energy minima and saddle points, while at the same time conforming to a notion of a "folding funnel" as it is discussed in the protein folding literature.

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