Funnels in energy landscapes

DOI10.1140/EPJB/E2008-00136-7zbMATH Open1189.60137arXiv0707.3719OpenAlexW3098158996WikidataQ56991057 ScholiaQ56991057MaRDI QIDQ978649FDOQ978649

Authors: Konstantin Klemm, C. Flamm, Peter F. Stadler 

Publication date: 25 June 2010

Published in: The European Physical Journal B. Condensed Matter and Complex Systems (Search for Journal in Brave)

Abstract: Local minima and the saddle points separating them in the energy landscape are known to dominate the dynamics of biopolymer folding. Here we introduce a notion of a "folding funnel" that is concisely defined in terms of energy minima and saddle points, while at the same time conforming to a notion of a "folding funnel" as it is discussed in the protein folding literature.

Full work available at URL: https://arxiv.org/abs/0707.3719

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Mathematics Subject Classification ID

Applications of Markov chains and discrete-time Markov processes on general state spaces (social mobility, learning theory, industrial processes, etc.) (60J20) Molecular structure (graph-theoretic methods, methods of differential topology, etc.) (92E10)

Cites Work

• Title not available (Why is that?)
• Efficient computation of RNA folding dynamics
• A physicist's approach to number partitioning

Cited In (3)

• Title not available (Why is that?)
• Rugged and elementary landscapes
• RNA folding kinetics using Monte Carlo and Gillespie algorithms

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