On the design of high-performance algorithms for aligning multiple protein sequences on mesh-based multiprocessor architectures

DOI10.1016/J.JPDC.2007.03.007zbMATH Open1125.68377OpenAlexW2061990781MaRDI QIDQ995645FDOQ995645

Authors Diana H. P. Low, Bharadwaj Veeravalli, David A. Bader 

Publication date 3 September 2007

Published in Journal of Parallel and Distributed Computing (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.jpdc.2007.03.007

zbMATH Keywords

divisible loadsmultiple sequence alignmentmesh topologySmith-Waterman algorithmprotein sequences

Mathematics Subject Classification ID

Performance evaluation, queueing, and scheduling in the context of computer systems (68M20) Searching and sorting (68P10)

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• A parallel algorithm for large-scale multiple sequence alignment
• Integrating Amdahl-like Laws and Divisible Load Theory

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