Finding pathway structures in protein interaction networks

DOI10.1007/S00453-007-0155-7MaRDI QIDQ995774zbMATH OpenOpenAlexFDO

Authors Songjian Lu, Fenghui Zhang, Sing-Hoi Sze, Jianer Chen

Publication date 10 September 2007

Published in Algorithmica (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/s00453-007-0155-7

zbMATH Keywords

DIP database

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Analysis of algorithms (68W40) Nonnumerical algorithms (68W05)

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(9)

• Identifying Functional Families of Trajectories in Biological Pathways by Soft Clustering: Application to TGF- $$\beta $$ Signaling
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• Finding supported paths in heterogeneous networks
• Bioinformatics in protein kinases regulatory network and drug discovery
• Computing shortest hyperpaths for pathway inference in cellular reaction networks
• Data Integration in the Life Sciences
• Research in Computational Molecular Biology
• Applications of domain-domain interactions in pathway study
• Enumerating dominant pathways in biological networks by information flow analysis

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