Statistical inference in mechanistic models: time warping for improved gradient matching

DOI10.1007/S00180-017-0753-ZMaRDI QIDQ99665zbMATH OpenOpenAlexDBLPWikidataFDO

Authors Mu Niu, Benn Macdonald, Simon Rogers, Maurizio Filippone, Dirk Husmeier, Mu Niu, Benn Macdonald, Simon Rogers, M. Filippone, Dirk Husmeier

Publication date 9 August 2017

Published in Computational Statistics (Search for Journal in Brave)

Copyright license Creative Commons Attribution 4.0 International

Full work available at URL https://doi.org/10.1007/s00180-017-0753-z

zbMATH Keywords

reproducing kernel Hilbert spacedifferential equationsdynamical systemsobjective function

Mathematics Subject Classification ID

Computational methods for problems pertaining to statistics (62-08) Applications of statistics to biology and medical sciences; meta analysis (62P10) Biomechanical solid mechanics (74L15)

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Cites work

• scientific article; zbMATH DE number 2060665 (Why is no real title available?)
• A new constitutive framework for arterial wall mechanics and a comparative study of material models
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• Parameter Estimation for Differential Equations: a Generalized Smoothing Approach
• Parameter Estimation of Partial Differential Equation Models
• Parameter estimation for differential equation models using a framework of measurement error in regression models
• Pattern recognition and machine learning.
• Sieve estimation of constant and time-varying coefficients in nonlinear ordinary differential equation models by considering both numerical error and measurement error
• Sparse additive ordinary differential equations for dynamic gene regulatory network modeling
• Statistical analysis of trajectories on Riemannian manifolds: bird migration, hurricane tracking and video surveillance
• Theory of Reproducing Kernels
• Variable Selection via Nonconcave Penalized Likelihood and its Oracle Properties

Cited in

(6)

• R package for statistical inference in dynamical systems using kernel based gradient matching: KGode
• Model selection via marginal likelihood estimation by combining thermodynamic integration and gradient matching
• Differential equations in data analysis
• KGode
• Approximate Bayesian inference in semi-mechanistic models
• Maximum profile likelihood estimation of differential equation parameters through model based smoothing state estimates

Describes a project that uses

Uses Software

• PRMLT
• deGradInfer
• BioBayes

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