RAINBOWR

Authors Kosuke Hamazaki, Hiroyoshi Iwata

Last update 21 May 2025

Copyright license MIT license, File License

Software version identifier 0.1.29, PACKAGES.rds, 0.1.13, 0.1.14, 0.1.17, 0.1.19, 0.1.21, 0.1.26, 0.1.32, 0.1.33, 0.1.35, 0.1.38

Description

By using 'RAINBOWR' (Reliable Association INference By Optimizing Weights with R), users can test multiple SNPs (Single Nucleotide Polymorphisms) simultaneously by kernel-based (SNP-set) methods. This package can also be applied to haplotype-based GWAS (Genome-Wide Association Study). Users can test not only additive effects but also dominance and epistatic effects. In detail, please check our paper on PLOS Computational Biology: Kosuke Hamazaki and Hiroyoshi Iwata (2020) <doi:10.1371/journal.pcbi.1007663>.

Cites work

RAINBOW: Haplotype-based genome-wide association study using a novel SNP-set method

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