RNA sequence, structure, and function: computational and bioinformatic methods

DOI10.1007/978-1-62703-709-9MaRDI QIDQ457828zbMATHOpenAlexFDO

Authors

Publication date 29 September 2014

Published in Methods in Molecular Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/978-1-62703-709-9

zbMATH Keywords

stochastic context free grammarsmicroRNARNA structuremultiple sequence alignmentsnon-coding RNAphylogeny of RNA structureRNA foldingRNA motifRNA-protein interactionsiRNA design

Mathematics Subject Classification ID

Genetics and epigenetics (92D10) Protein sequences, DNA sequences (92D20) Proceedings, conferences, collections, etc. pertaining to biology (92-06) Mathematical biology in general (92B99)

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Cited in

(11)

• Regulatory RNAs. Basics, methods and applications
• RNA bioinformatics
• Topological language for RNA
• scientific article; zbMATH DE number 79316 (Why is no real title available?)
• Stochastic sampling of structural contexts improves the scalability and accuracy of RNA 3D module identification
• Bioinformatics and RNA
• Metric for comparison of graph-theoretic models of the same dimension with ordered vertices
• Posets and spaces of \(k\)-noncrossing RNA structures
• Computational methods in noncoding RNA research
• Inference of RNA structural contacts by direct coupling analysis
• Messenger RNA Information: Its Implication in Protein Structure Determination and Others

Describes a project that uses

Uses Software

• PHYLIP

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