Ravages

MaRDI QIDQ60969CRANFDO

Authors Ozvan Bocher, Hervé Perdry, Gaelle Marenne

Last update 27 February 2026

Copyright license GNU General Public License, version 3.0

Software version identifier 1.1.3, PACKAGES.rds, 0.1.1, 0.1.2, 0.1.3, 0.1.4, 0.1.5, 0.1, 1.0.0, 1.1.0, 1.1.1, 1.1.2, 1.2.0

Description

Rare variant association tests: burden tests (Bocher et al. 2019 <doi:10.1002/gepi.22210>) and the Sequence Kernel Association Test (Bocher et al. 2021 <doi:10.1038/s41431-020-00792-8>) in the whole genome using the RAVA-FIRST approach (Bocher et al. 2022 <doi:10.1371/journal.pgen.1009923>). Ravages also enables to perform genetic simulations (Bocher et al. 2023 <doi:10.1002/gepi.22529>).

Cites work

• Extension of SKAT to multi-category phenotypes through a geometrical interpretation
• Rare variant association testing for multicategory phenotype
• Ravages: An R package for the simulation and analysis of rare variants in multicategory phenotypes
• Testing for association with rare variants in the coding and non-coding genome: RAVA-FIRST, a new approach based on CADD deleteriousness score

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