Rduckhts

MaRDI QIDQ7370599CRANFDO

Authors Sounkou Mahamane Toure

Last update 16 September 2026

Copyright license GNU General Public License, version 3.0

Software version identifier PACKAGES.rds, 0.1.2-0.1.4, 0.1.3-0.0.2, 1.1.4-0.0.1, 1.1.6-0.0.2, 1.2.1-0.1.0, 1.3.0-0.1.0, 1.4.0-0.1.0, 1.5.0-0.1.0, 1.5.1-0.1.3, 1.5.2-0.1.5

Description

Bundles the 'duckhts' 'DuckDB' extension for reading High Throughput Sequencing file formats with 'DuckDB'. The 'DuckDB' C extension API <https://duckdb.org/docs/stable/clients/c/api> and its 'htslib' dependency are compiled from vendored sources during package installation. James K Bonfield and co-authors (2021) <doi:10.1093/gigascience/giab007>. VariantKey / RegionKey support follows Nicola Asuni (2018) <doi:10.1101/473744>.

Cites work

• HTSlib: C library for reading/writing high-throughput sequencing data
• VariantKey: A Reversible Numerical Representation of Human Genetic Variants

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