Reduction techniques for network validation in systems biology

DOI10.1016/J.JTBI.2012.08.042MaRDI QIDQ1790877zbMATH OpenOpenAlexWikidataFDO

Authors Yanyan Li

Publication date 4 October 2018

Published in Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.jtbi.2012.08.042

zbMATH Keywords

elementary flux modesinvariantsmetabolismnetwork reductionPetri net

Mathematics Subject Classification ID

Models and methods for concurrent and distributed computing (process algebras, bisimulation, transition nets, etc.) (68Q85) Systems biology, networks (92C42)

Recommendations

• Model decomposition and reduction tools for large-scale networks in systems biology
• Logical reduction of biological networks to their most determinative components
• Algorithmic reduction of biological networks with multiple time scales
• Complexity reduction preserving dynamical behavior of biochemical networks
• Model reduction of biochemical reactions networks by tropical analysis methods
• Guaranteed error bounds for structured complexity reduction of biochemical networks
• Reduction of Boolean network models
• Reduction of the complexity of models of network structures and systems
• Methods of model reduction for large-scale biological systems: a survey of current methods and trends

Cites work

• A Survey and Comparison of Methods for Finding All Vertices of Convex Polyhedral Sets
• An Efficient Heuristic Procedure for Partitioning Graphs
• Applications and Theory of Petri Nets 2004
• scientific article; zbMATH DE number 3885321 (Why is no real title available?)
• scientific article; zbMATH DE number 3980500 (Why is no real title available?)
• scientific article; zbMATH DE number 4033100 (Why is no real title available?)
• scientific article; zbMATH DE number 47952 (Why is no real title available?)
• scientific article; zbMATH DE number 3466805 (Why is no real title available?)
• scientific article; zbMATH DE number 3468286 (Why is no real title available?)
• scientific article; zbMATH DE number 1234104 (Why is no real title available?)
• scientific article; zbMATH DE number 1302047 (Why is no real title available?)

Cited in

(6)

• A large-scale assessment of exact model reduction in the biomodels repository
• Memory effects in biochemical networks as the natural counterpart of extrinsic noise
• Verifying chemical reaction network implementations: a pathway decomposition approach
• Verification of dynamic behaviour in qualitative molecular networks describing gene regulation, signalling and whole-cell metabolism
• Reduction of the complexity of models of network structures and systems
• Computational Methods in Systems Biology

Describes a project that uses

Uses Software

• efmtool

This page was built for publication: Reduction techniques for network validation in systems biology

Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q1790877)