Revisiting the relationship between compositional sequence complexity and periodicity

DOI10.1016/J.COMPBIOLCHEM.2007.09.001MaRDI QIDQ936027zbMATH OpenOpenAlexWikidataFDO

Authors Alexander Bolshoy

Publication date 12 August 2008

Published in Computational Biology and Chemistry (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.compbiolchem.2007.09.001

zbMATH Keywords

entropyinformationE. colinucleosome positioninghidden periodicity

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Computational methods for problems pertaining to biology (92-08)

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Cites work

• A maximum entropy principle for the distribution of local complexity in naturally occurring nucleotide sequences
• Information capacity of nucleotide sequences and its applications
• Information decomposition method to analyze symbolical sequences
• On the robustness of maximum entropy relationships for complexity distributions of nucleotide sequences
• Shuffling biological sequences

Cited in

(10)

• Spectral sum rules and search for periodicities in DNA sequences
• A global compositional complexity measure for biological sequences: AT-rich and GC-rich genomes encode less complex proteins
• An exploration of the triplet periodicity in nucleotide sequences with a mature self-adaptive spectral rotation approach
• Information decomposition method to analyze symbolical sequences
• Upstream curved sequences in \textit{E. coli} are related to the regulation of transcription initiation
• Periodic power spectrum with applications in detection of latent periodicities in DNA sequences
• Composition of recursions and nonlinear complexity of periodic binary sequences
• The performances of the chi-square test and complexity measures for signal recognition in biological sequences
• Statistical tools for discovering pseudo-periodicities in biological sequences
• Identification of repeats in DNA sequences using nucleotide distribution uniformity

Describes a project that uses

Uses Software

• DISTAN

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